Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23639 Brassica carinata HOM05D006257 ORTHO05D007708 4.1e-46 188.0 113 100.0
Sp6g02450 Schrenkiella parvula HOM05D006257 ORTHO05D007708 6.1e-34 147.5 113 80.5
BolC9t53138H Brassica oleracea HOM05D006257 ORTHO05D007708 1.4e-33 146.4 113 78.8
A09p01980 Brassica napus HOM05D006257 ORTHO05D007708 2.3e-33 145.6 113 77.9
Thhalv10028953m.g Eutrema salsugineum HOM05D006257 ORTHO05D007708 3.0e-33 145.2 112 76.8
BcaC04g23996 Brassica carinata HOM05D006257 ORTHO05D007708 4.0e-33 144.8 113 77.9
BraA09t35849Z Brassica rapa HOM05D006257 ORTHO05D007708 4.0e-33 144.8 113 77.9
C09p02090 Brassica napus HOM05D006257 ORTHO05D007708 5.7e-32 141.0 113 76.1
Carub.0006s3460 Capsella rubella HOM05D006257 ORTHO05D007708 9.2e-30 133.7 112 71.4
AL6G50510 Arabidopsis lyrata HOM05D006257 ORTHO05D007708 2.7e-29 132.1 112 73.2
AT4G02530 Arabidopsis thaliana HOM05D006257 ORTHO05D007708 1.3e-28 129.8 113 71.7
Aa31LG5G2160 Aethionema arabicum HOM05D006257 ORTHO05D007708 4.0e-25 118.2 116 60.3
THA.LOC104808977 Tarenaya hassleriana HOM05D006257 ORTHO05D007708 5.4e-22 107.8 119 58.8
CARHR250830 Cardamine hirsuta HOM05D006257 ORTHO05D007708 3.5e-21 105.1 113 69.9
ClCG11G003160 Citrullus lanatus HOM05D006257 ORTHO05D007708 3.0e-12 75.5 83 54.2
Sed0025440 Sechium edule HOM05D006257 ORTHO05D007708 5.0e-12 74.7 82 56.1
MD15G1170900 Malus domestica HOM05D006257 ORTHO05D007708 1.1e-11 73.6 82 58.5
CAN.G551.82 Capsicum annuum HOM05D006257 ORTHO05D007708 1.9e-11 72.8 84 54.8
Ciclev10009322m.g Citrus clementina HOM05D006257 ORTHO05D007708 2.5e-11 72.4 71 56.3
MELO3C004491.2 Cucumis melo HOM05D006257 ORTHO05D007708 2.5e-11 72.4 83 53.0
CsaV3_2G002980 Cucumis sativus L. HOM05D006257 ORTHO05D007708 2.5e-11 72.4 83 53.0
Manes.06G057000 Manihot esculenta HOM05D006257 ORTHO05D007708 3.3e-11 72.0 66 63.6
Medtr0339s0030 Medicago truncatula HOM05D006257 ORTHO05D007708 3.3e-11 72.0 73 58.9
Prupe.7G245400 Prunus persica HOM05D006257 ORTHO05D007708 3.3e-11 72.0 85 54.1
COL.COLO4_35097 Corchorus olitorius HOM05D006257 ORTHO05D007708 5.6e-11 71.2 81 54.3
MD02G1029500 Malus domestica HOM05D006257 ORTHO05D007708 5.6e-11 71.2 82 57.3
MSTRG.26415 Avicennia marina HOM05D006257 ORTHO05D007708 2.1e-10 69.3 82 52.4
Cpa.g.sc46.16 Carica papaya HOM05D006257 ORTHO05D007708 2.1e-10 69.3 66 62.1
Atru.chr7.1126 Acer truncatum HOM05D006257 ORTHO05D007708 2.8e-10 68.9 110 44.5
Eucgr.C04235 Eucalyptus grandis HOM05D006257 ORTHO05D007708 2.8e-10 68.9 109 43.1
Potri.018G129600 Populus trichocarpa HOM05D006257 ORTHO05D007708 2.8e-10 68.9 66 60.6
Sabra18G0110100 Salix brachista HOM05D006257 ORTHO05D007708 2.8e-10 68.9 66 60.6
GSVIVG01015564001 Vitis vinifera HOM05D006257 ORTHO05D007708 4.7e-10 68.2 89 51.7
CiPaw.03G245900 Carya illinoinensis HOM05D006257 ORTHO05D007708 6.2e-10 67.8 79 50.6
Ca_06925_v3 Cicer arietinum L. HOM05D006257 ORTHO05D007708 8.1e-10 67.4 107 45.8
Cc06_g08290 Coffea canephora HOM05D006257 ORTHO05D007708 8.1e-10 67.4 77 53.2
DCAR_020916 Daucus carota HOM05D006257 ORTHO05D007708 8.1e-10 67.4 81 51.9
ECA234G3820 Erigeron canadensis HOM05D006257 ORTHO05D007708 8.1e-10 67.4 80 53.8
Nitab4.5_0001349g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.1e-09 67.0 110 44.5
Nitab4.5_0006319g0030 Nicotiana tabacum HOM05D006257 ORTHO05D007708 1.1e-09 67.0 110 43.6
Sabra06G0050300 Salix brachista HOM05D006257 ORTHO05D007708 1.1e-09 67.0 66 57.6
Duzib187G1365 Durio zibethinus HOM05D006257 ORTHO05D007708 1.4e-09 66.6 81 54.3
Lalb_Chr13g0301741 Lupinus albus HOM05D006257 ORTHO05D007708 1.4e-09 66.6 71 57.7
Manes.14G133800 Manihot esculenta HOM05D006257 ORTHO05D007708 1.4e-09 66.6 66 59.1
Sopen12g004590 Solanum pennellii HOM05D006257 ORTHO05D007708 1.4e-09 66.6 83 51.8
Lj4g0014254 Lotus japonicus HOM05D006257 ORTHO05D007708 1.8e-09 66.2 92 47.8
Thecc.09G128900 Theobroma cacao HOM05D006257 ORTHO05D007708 1.8e-09 66.2 81 54.3
Duzib168G0222 Durio zibethinus HOM05D006257 ORTHO05D007708 2.3e-09 65.9 81 53.1
Solyc12g009600.2 Solanum lycopersicum HOM05D006257 ORTHO05D007708 3.1e-09 65.5 108 44.4
Haze_25555 Corylus avellana HOM05D006257 ORTHO05D007708 4.0e-09 65.1 82 51.2
Potri.006G067600 Populus trichocarpa HOM05D006257 ORTHO05D007708 4.0e-09 65.1 66 56.1
Sed0003979 Sechium edule HOM05D006257 ORTHO05D007708 4.0e-09 65.1 83 47.0
Glyma.04G142800 Glycine max HOM05D006257 ORTHO05D007708 5.2e-09 64.7 66 56.1
Oeu052179.2 Olea europaea HOM05D006257 ORTHO05D007708 5.2e-09 64.7 81 53.1
CiPaw.04G172800 Carya illinoinensis HOM05D006257 ORTHO05D007708 6.8e-09 64.3 80 50.0
CDE07G0641 Ceratophyllum demersum HOM05D006257 ORTHO05D007708 6.8e-09 64.3 80 48.8
Hma1.2p1_0931F.1_g238140 Hydrangea macrophylla HOM05D006257 ORTHO05D007708 6.8e-09 64.3 66 59.1
HanXRQChr10g0315681 Helianthus annuus HOM05D006257 ORTHO05D007708 8.9e-09 63.9 66 60.6
PGR102G0698 Punica granatum HOM05D006257 ORTHO05D007708 8.9e-09 63.9 67 53.7
Dinv36505 Davidia involucrata HOM05D006257 ORTHO05D007708 1.5e-08 63.2 64 59.4
TPR.G26482 Trifolium pratense HOM05D006257 ORTHO05D007708 1.5e-08 63.2 112 45.5
arahy.Tifrunner.gnm1.ann1.BX3F9W Arachis hypogaea HOM05D006257 ORTHO05D007708 2.0e-08 62.8 104 44.2
arahy.Tifrunner.gnm1.ann1.FTT948 Arachis hypogaea HOM05D006257 ORTHO05D007708 2.0e-08 62.8 104 44.2
Glyma.06G224200 Glycine max HOM05D006257 ORTHO05D007708 2.0e-08 62.8 66 54.5
Lalb_Chr07g0179081 Lupinus albus HOM05D006257 ORTHO05D007708 2.0e-08 62.8 82 48.8
Phvul.003G166300 Phaseolus vulgaris HOM05D006257 ORTHO05D007708 2.0e-08 62.8 67 56.7
Actinidia21972 Actinidia chinensis HOM05D006257 ORTHO05D007708 2.6e-08 62.4 65 58.5
QL02p088998 Quercus lobata HOM05D006257 ORTHO05D007708 4.4e-08 61.6 80 51.2
VMungo1215G0813 Vigna mungo HOM05D006257 ORTHO05D007708 4.4e-08 61.6 67 55.2
Lalb_Chr08g0234691 Lupinus albus HOM05D006257 ORTHO05D007708 5.8e-08 61.2 78 53.8
Psat4g037320 Pisum sativum HOM05D006257 ORTHO05D007708 5.8e-08 61.2 83 49.4
Hund09262 Selenicereus undatus HOM05D006257 ORTHO05D007708 5.8e-08 61.2 69 55.1
vmacro20574 Vaccinium macrocarpon HOM05D006257 ORTHO05D007708 9.9e-08 60.5 65 56.9
Actinidia40485 Actinidia chinensis HOM05D006257 ORTHO05D007708 1.3e-07 60.1 65 56.9
MBI04_g29340_MAGBIO Magnolia biondii HOM05D006257 ORTHO05D007708 1.3e-07 60.1 66 53.0
Nn8g39488 Nelumbo nucifera HOM05D006257 ORTHO05D007708 1.3e-07 60.1 82 47.6
Oeu038255.2 Olea europaea HOM05D006257 ORTHO05D007708 1.3e-07 60.1 39 79.5
Peaxi162Scf00313g00815 Petunia axillaris HOM05D006257 ORTHO05D007708 1.3e-07 60.1 120 40.0
Glyma.17G113300 Glycine max HOM05D006257 ORTHO05D007708 1.7e-07 59.7 62 58.1
TWI34G0058 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 2.2e-07 59.3 83 49.4
TAR636G3495 Trochodendron aralioides HOM05D006257 ORTHO05D007708 2.2e-07 59.3 38 81.6
Gohir.D07G040500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 2.9e-07 58.9 60 55.0
Gorai.001G043000 Gossypium raimondii HOM05D006257 ORTHO05D007708 2.9e-07 58.9 60 55.0
CSS0030940 Camellia sinensis var. sinensis HOM05D006257 ORTHO05D007708 4.9e-07 58.2 64 57.8
Migut.K00442 Erythranthe guttata HOM05D006257 ORTHO05D007708 4.9e-07 58.2 70 52.9
Lj7A424T23 Lonicera japonica HOM05D006257 ORTHO05D007708 4.9e-07 58.2 65 52.3
TWI63G0502 Tripterygium wilfordii HOM05D006257 ORTHO05D007708 4.9e-07 58.2 66 56.1
Ah.09g225230 Amaranthus hybridus HOM05D006257 ORTHO05D007708 8.3e-07 57.4 70 52.9
PSO210G1348 Papaver somniferum HOM05D006257 ORTHO05D007708 8.3e-07 57.4 79 49.4
TAR625G1128 Trochodendron aralioides HOM05D006257 ORTHO05D007708 8.3e-07 57.4 44 68.2
EL10Ac8g18684 Beta vulgaris HOM05D006257 ORTHO05D007708 1.1e-06 57.0 79 48.1
Gohir.A07G036500 Gossypium hirsutum HOM05D006257 ORTHO05D007708 1.4e-06 56.6 108 41.7
AUR62011151 Chenopodium quinoa HOM05D006257 ORTHO05D007708 1.9e-06 56.2 67 52.2
PSO210G1954 Papaver somniferum HOM05D006257 ORTHO05D007708 1.9e-06 56.2 80 47.5
Sc14g0000190 Simmondsia chinensis HOM05D006257 ORTHO05D007708 1.9e-06 56.2 40 70.0
FvH4_1g03010 Fragaria vesca HOM05D006257 ORTHO05D007708 2.4e-06 55.8 66 51.5
FAN19G0162 Fragaria x ananassa HOM05D006257 ORTHO05D007708 2.4e-06 55.8 66 51.5
FAN28G1785 Fragaria x ananassa HOM05D006257 ORTHO05D007708 2.4e-06 55.8 66 51.5
Lsat_1_v5_gn_5_95081 Lactuca sativa HOM05D006257 ORTHO05D007708 2.4e-06 55.8 62 53.2
Aqoxy7G02265 Aquilegia oxysepala HOM05D006257 ORTHO05D007708 3.2e-06 55.5 81 45.7
RcHm_v2.0_Chr2g0088141 Rosa chinensis HOM05D006257 ORTHO05D007708 3.2e-06 55.5 82 45.1
FAN26G0886 Fragaria x ananassa HOM05D006257 ORTHO05D007708 5.4e-06 54.7 66 50.0
unitig_37.g12643 Utricularia gibba HOM05D006257 ORTHO05D007708 5.4e-06 54.7 66 47.0
FAN19G1291 Fragaria x ananassa HOM05D006257 ORTHO05D007708 7.1e-06 54.3 64 51.6
FAN23G1258 Fragaria x ananassa HOM05D006257 ORTHO05D007708 7.1e-06 54.3 66 50.0
SGA_v2.0_scaffold63G21838 Striga asiatica HOM05D006257 ORTHO05D007708 7.1e-06 54.3 79 44.3


User provided reference genes

Program Settings