Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 4.1e-34 147.5 76 100.0
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.1e-29 132.9 77 93.5
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 2.3e-24 115.2 77 85.7
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.1e-23 112.8 77 84.4
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 7.3e-23 110.2 74 83.8
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 3.6e-22 107.8 93 69.9
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.7e-19 99.0 70 82.9
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.7e-19 99.0 70 82.9
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.7e-19 99.0 70 82.9
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.7e-19 99.0 70 82.9
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.1e-18 96.3 76 69.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.2e-17 92.8 76 67.1
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 1.2e-17 92.8 76 69.7
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.7e-17 91.7 74 73.0
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.0e-16 89.7 77 70.1
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.3e-16 89.4 77 66.2
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 66.2
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 3.0e-16 88.2 68 67.6
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.0e-16 88.2 68 69.1
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.1e-16 87.4 74 66.2
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.1e-16 87.4 68 72.1
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 69 72.5
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.5e-15 85.1 75 68.0
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.5e-15 85.1 77 64.9
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 3.3e-15 84.7 69 71.0
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.3e-15 84.3 74 60.8
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 9.5e-15 83.2 68 64.7
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.5e-15 83.2 74 60.8
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.5e-15 83.2 74 60.8
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.6e-14 82.4 68 70.6
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.6e-14 82.4 75 65.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.6e-14 82.4 75 65.3
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.8e-14 81.6 76 61.8
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 3.6e-14 81.3 71 63.4
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 4.7e-14 80.9 69 65.2
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 4.7e-14 80.9 67 68.7
BolC9t57615H Brassica oleracea HOM05D003549 ORTHO05D039484 6.2e-14 80.5 76 65.8
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 1.1e-13 79.7 71 62.0
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 1.1e-13 79.7 68 66.2
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.4e-13 79.3 73 63.0
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.4e-13 79.3 73 63.0
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.4e-13 79.3 69 66.7
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.8e-13 79.0 76 63.2
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.8e-13 79.0 69 63.8
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 2.4e-13 78.6 69 62.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 3.1e-13 78.2 69 68.1
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.1e-13 78.2 77 66.2
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 4.0e-13 77.8 69 62.3
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 4.0e-13 77.8 77 66.2
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 5.2e-13 77.4 68 66.2
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 6.8e-13 77.0 66 65.2
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 6.8e-13 77.0 69 62.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 6.8e-13 77.0 68 64.7
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.8e-13 77.0 76 61.8
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.8e-13 77.0 69 63.8
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 8.9e-13 76.6 69 60.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 8.9e-13 76.6 77 64.9
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.2e-12 76.3 76 61.8
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.2e-12 76.3 74 59.5
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.5e-12 75.9 71 60.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-12 75.5 73 60.3
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-12 75.5 73 60.3
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.0e-12 75.5 73 60.3
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 2.0e-12 75.5 69 62.3
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.0e-12 75.5 69 60.9
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 3.4e-12 74.7 75 62.7
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 4.4e-12 74.3 69 63.8
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.4e-12 74.3 80 55.0
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.4e-12 74.3 68 64.7
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 5.8e-12 73.9 74 63.5
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 5.8e-12 73.9 68 63.2
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 9.9e-12 73.2 68 61.8
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 9.9e-12 73.2 69 62.3
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.7e-11 72.4 75 62.7
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.7e-11 72.4 68 60.3
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.7e-11 72.4 69 59.4
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.2e-11 72.0 74 58.1
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.2e-11 72.0 74 58.1
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.2e-11 72.0 68 61.8
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 2.2e-11 72.0 70 61.4
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 2.9e-11 71.6 52 69.2
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 2.9e-11 71.6 49 79.6
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.8e-11 71.2 74 59.5
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 3.8e-11 71.2 68 61.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.8e-11 71.2 73 57.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.8e-11 71.2 73 57.5
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.8e-11 71.2 68 61.8
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.8e-11 71.2 73 58.9
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 4.9e-11 70.9 68 61.8
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.9e-11 70.9 68 58.8
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 4.9e-11 70.9 68 58.8
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 8.4e-11 70.1 71 57.7
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 8.4e-11 70.1 69 56.5
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 3.2e-10 68.2 76 56.6
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 3.2e-10 68.2 68 60.3
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 4.1e-10 67.8 77 59.7
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.1e-10 67.8 76 57.9
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 4.1e-10 67.8 76 57.9
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.1e-10 67.8 76 57.9
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 5.4e-10 67.4 72 59.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 5.4e-10 67.4 69 62.3
BcaC03g16026 Brassica carinata HOM05D000138 ORTHO05D032649 7.1e-10 67.0 46 78.3
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 7.1e-10 67.0 75 57.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 7.1e-10 67.0 68 60.3
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.1e-10 67.0 68 58.8
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.1e-10 67.0 68 58.8
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 9.2e-10 66.6 70 61.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 68 58.8
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.2e-09 66.2 69 58.0
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 1.6e-09 65.9 73 56.2
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.6e-09 65.9 68 57.4
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.6e-09 65.9 63 68.3
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.6e-09 65.9 63 68.3
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 58.0
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 58.0
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 55.1
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 55.1
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 55.1
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 55.1
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 2.1e-09 65.5 48 72.9
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 2.1e-09 65.5 69 58.0
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 2.7e-09 65.1 65 60.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 2.7e-09 65.1 76 52.6
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 6.0e-09 63.9 69 56.5
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.7e-08 62.4 56 64.3
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 1.7e-08 62.4 64 57.8
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.7e-08 62.4 70 57.1
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.3e-08 62.0 71 54.9
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.3e-08 62.0 76 51.3
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 3.0e-08 61.6 69 52.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-08 61.6 69 52.2
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 3.0e-08 61.6 69 52.2
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 5.1e-08 60.8 75 56.0
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 5.1e-08 60.8 76 57.9
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.1e-08 60.8 75 52.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 5.1e-08 60.8 75 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 6.6e-08 60.5 71 50.7
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 6.6e-08 60.5 74 55.4
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 1.1e-07 59.7 51 66.7
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 1.1e-07 59.7 62 56.5
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.5e-07 59.3 68 52.9
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 2.5e-07 58.5 45 68.9
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 2.5e-07 58.5 69 56.5
BcaC04g20105 Brassica carinata HOM05D003549 ORTHO05D039484 7.3e-07 57.0 76 52.6
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 7.3e-07 57.0 75 54.7
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 7.3e-07 57.0 75 50.7
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 9.6e-07 56.6 68 52.9
MCO07G020 Micromonas commoda HOM05D003549 ORTHO05D004223 1.6e-06 55.8 68 51.5
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 3.6e-06 54.7 69 53.6
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.6e-06 54.7 79 50.6
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 4.7e-06 54.3 47 61.7
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.2e-06 53.9 110 42.7
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 8.1e-06 53.5 68 50.0
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 8.1e-06 53.5 59 54.2


User provided reference genes

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