Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23586 Brassica carinata HOM05D003546 ORTHO05D014507 1.2e-62 243.0 127 100.0
BcaC02g09368 Brassica carinata HOM05D000467 ORTHO05D014507 1.5e-20 103.2 68 73.5
BolC4t25760H Brassica oleracea HOM05D000467 ORTHO05D014507 3.7e-19 98.6 52 86.5
Thhalv10003550m.g Eutrema salsugineum HOM05D000467 ORTHO05D000379 1.0e-13 80.5 44 88.6
BraA02t08861Z Brassica rapa HOM05D000467 ORTHO05D000379 1.4e-13 80.1 44 88.6
A02p38870 Brassica napus HOM05D000467 ORTHO05D000379 1.8e-13 79.7 44 88.6
BcaC05g26111 Brassica carinata HOM05D000467 ORTHO05D014507 5.1e-13 78.2 52 80.8
BcaC03g17820 Brassica carinata HOM05D000467 ORTHO05D000379 6.7e-13 77.8 44 86.4
C02p58480 Brassica napus HOM05D000467 ORTHO05D000379 6.7e-13 77.8 44 86.4
BolC2t11909H Brassica oleracea HOM05D000467 ORTHO05D000379 6.7e-13 77.8 44 86.4
BcaNung04739 Brassica carinata HOM05D000467 ORTHO05D000379 1.5e-12 76.6 42 88.1
C07p41290 Brassica napus HOM05D000467 ORTHO05D000379 1.5e-12 76.6 42 88.1
BolC7t44654H Brassica oleracea HOM05D000467 ORTHO05D000379 1.5e-12 76.6 42 88.1
Sp2g21040 Schrenkiella parvula HOM05D000467 ORTHO05D000379 5.7e-12 74.7 44 84.1
A06p37140 Brassica napus HOM05D000467 ORTHO05D000379 1.7e-11 73.2 42 81.0
AT5G27030 Arabidopsis thaliana HOM05D000467 ORTHO05D000379 2.0e-09 66.2 48 68.8
BraA06t26640Z Brassica rapa HOM05D000467 ORTHO05D000379 2.0e-09 66.2 47 72.3
BcaB05g23585 Brassica carinata HOM05D003546 ORTHO05D092130 1.7e-08 63.2 77 50.6
C05p20890 Brassica napus HOM05D017886 ORTHO05D014507 3.8e-08 62.0 31 93.5
THA.LOC104802787 Tarenaya hassleriana HOM05D000467 ORTHO05D000379 3.8e-08 62.0 61 57.4
CARHR186480 Cardamine hirsuta HOM05D000467 ORTHO05D000379 6.5e-08 61.2 46 71.7
Medtr1g083700 Medicago truncatula HOM05D000467 ORTHO05D000379 3.2e-07 58.9 61 52.5
QL03p018959 Quercus lobata HOM05D000467 ORTHO05D000379 5.5e-07 58.2 61 54.1
THA.LOC104818737 Tarenaya hassleriana HOM05D000467 ORTHO05D000379 5.5e-07 58.2 61 54.1
Ca_10153_v3 Cicer arietinum L. HOM05D000467 ORTHO05D000379 9.4e-07 57.4 61 50.8
Lalb_Chr15g0077541 Lupinus albus HOM05D000467 ORTHO05D000379 9.4e-07 57.4 61 52.5
arahy.Tifrunner.gnm1.ann1.6CJL2B Arachis hypogaea HOM05D000467 ORTHO05D000379 1.2e-06 57.0 61 52.5
arahy.Tifrunner.gnm1.ann1.88CVAX Arachis hypogaea HOM05D000467 ORTHO05D000379 1.2e-06 57.0 61 52.5
Eucgr.H03269 Eucalyptus grandis HOM05D000467 ORTHO05D000379 1.6e-06 56.6 66 50.0
Lj5g0011137 Lotus japonicus HOM05D000467 ORTHO05D000379 1.6e-06 56.6 61 50.8
Phvul.007G198900 Phaseolus vulgaris HOM05D000467 ORTHO05D000379 1.6e-06 56.6 61 50.8
VMungo0720G1548 Vigna mungo HOM05D000467 ORTHO05D000379 1.6e-06 56.6 61 50.8
Lj5g0016914 Lotus japonicus HOM05D000467 ORTHO05D000379 2.1e-06 56.2 61 49.2
Psat6g151680 Pisum sativum HOM05D000467 ORTHO05D000379 2.1e-06 56.2 61 50.8
VMungo1383G1268 Vigna mungo HOM05D000467 ORTHO05D000379 2.1e-06 56.2 61 49.2
Duzib177G0971 Durio zibethinus HOM05D000467 ORTHO05D000379 2.7e-06 55.8 50 52.0
Haze_04101 Corylus avellana HOM05D000467 ORTHO05D000379 4.7e-06 55.1 61 50.8
Dinv24407 Davidia involucrata HOM05D000467 ORTHO05D000379 4.7e-06 55.1 42 64.3
Manes.09G174100 Manihot esculenta HOM05D000467 ORTHO05D000379 6.1e-06 54.7 66 51.5
TWI56G1212 Tripterygium wilfordii HOM05D000467 ORTHO05D000379 6.1e-06 54.7 47 61.7
Cfa006670 Carpinus fangiana HOM05D000467 ORTHO05D000379 7.9e-06 54.3 61 50.8
Haze_18686 Corylus avellana HOM05D000467 ORTHO05D000379 7.9e-06 54.3 42 61.9
Dinv30845 Davidia involucrata HOM05D000467 ORTHO05D000379 7.9e-06 54.3 61 52.5
Glyma.19G230500 Glycine max HOM05D000467 ORTHO05D000379 7.9e-06 54.3 61 50.8


User provided reference genes

Program Settings