Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23557 Brassica carinata HOM05D000292 ORTHO05D000172 2.5e-87 325.5 169 100.0
BcaC09g49752 Brassica carinata HOM05D000292 ORTHO05D000172 1.1e-42 177.2 259 45.6
Thhalv10002899m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 1.4e-42 176.8 211 51.2
BolC1t03264H Brassica oleracea HOM05D000292 ORTHO05D000172 1.8e-42 176.4 252 46.0
A01p26210 Brassica napus HOM05D000292 ORTHO05D000172 3.0e-37 159.1 238 45.0
AL3G20190 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.8e-35 152.5 244 41.4
BolC5t34533H Brassica oleracea HOM05D000292 ORTHO05D000172 4.1e-34 148.7 245 40.4
BcaC05g29642 Brassica carinata HOM05D000292 ORTHO05D000172 1.2e-33 147.1 245 40.0
C05p58810 Brassica napus HOM05D000292 ORTHO05D000172 1.2e-33 147.1 245 40.0
A05p39770 Brassica napus HOM05D000292 ORTHO05D000172 1.7e-32 143.3 245 39.6
BraA05t22760Z Brassica rapa HOM05D000292 ORTHO05D000172 1.7e-32 143.3 245 39.6
A07p06370 Brassica napus HOM05D000292 ORTHO05D000172 4.3e-31 138.7 205 42.9
C07p09510 Brassica napus HOM05D000292 ORTHO05D000172 4.3e-31 138.7 209 42.6
C01p33320 Brassica napus HOM05D000292 ORTHO05D000172 2.8e-30 136.0 229 42.4
Sp5g15130 Schrenkiella parvula HOM05D000020 ORTHO05D000172 2.8e-30 136.0 87 77.0
Carub.0003s0828 Capsella rubella HOM05D000292 ORTHO05D000172 1.8e-29 133.3 253 36.0
AT3G09110 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.2e-28 130.6 88 71.6
BolC7t41380H Brassica oleracea HOM05D000292 ORTHO05D000172 5.8e-28 128.3 153 46.4
Sp3g24320 Schrenkiella parvula HOM05D000292 ORTHO05D000172 2.9e-27 125.9 242 37.6
BcaC06g35942 Brassica carinata HOM05D000292 ORTHO05D000172 6.0e-25 118.2 88 65.9
BraA01t02544Z Brassica rapa HOM05D000292 ORTHO05D000172 3.6e-22 109.0 212 41.0
Aa31LG3G1640 Aethionema arabicum HOM05D000292 ORTHO05D000172 1.5e-20 103.6 250 31.2
BcaB06g26865 Brassica carinata HOM05D000292 ORTHO05D000172 3.4e-20 102.4 225 36.4
Carub.0002s0600 Capsella rubella HOM05D000292 ORTHO05D000172 1.7e-16 90.1 255 30.2
AL6G11090 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.2e-14 84.0 87 43.7
AL6G11080 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.8e-14 82.8 89 43.8
AT5G01150 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 4.7e-14 82.0 90 41.1
Carub.0006s0075 Capsella rubella HOM05D000292 ORTHO05D000172 1.8e-13 80.1 76 48.7
THA.LOC104816225 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 2.3e-13 79.7 88 45.5
CARHR083500 Cardamine hirsuta HOM05D000292 ORTHO05D000172 8.9e-13 77.8 79 45.6
Sp6g40510 Schrenkiella parvula HOM05D000292 ORTHO05D000172 1.2e-12 77.4 85 44.7
AL6G11050 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.4e-12 75.9 87 40.2
CARHR211440 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.4e-12 75.9 64 56.2
Sp4g10500 Schrenkiella parvula HOM05D000292 ORTHO05D000172 3.4e-12 75.9 87 41.4
AT5G01120 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 4.4e-12 75.5 89 40.4
AT5G01140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 4.4e-12 75.5 65 56.9
CARHR107120 Cardamine hirsuta HOM05D000292 ORTHO05D000172 7.5e-12 74.7 79 46.8
AL8G17250 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 9.9e-12 74.3 86 40.7
Sp7g01870 Schrenkiella parvula HOM05D000292 ORTHO05D000172 6.4e-11 71.6 98 42.9
CARHR211460 Cardamine hirsuta HOM05D000292 ORTHO05D000172 8.3e-11 71.2 84 39.3
AL1G22140 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.1e-10 70.9 167 32.3
BcaNung02761 Brassica carinata HOM05D000292 ORTHO05D000172 1.4e-10 70.5 85 45.9
BcaB01g06200 Brassica carinata HOM05D000292 ORTHO05D000172 1.9e-10 70.1 90 37.8
BcaB04g17549 Brassica carinata HOM05D000292 ORTHO05D000172 3.2e-10 69.3 83 44.6
A04p13080 Brassica napus HOM05D000292 ORTHO05D000172 3.2e-10 69.3 112 35.7
A10p33600 Brassica napus HOM05D000292 ORTHO05D000172 3.2e-10 69.3 65 46.2
BraA10t45391Z Brassica rapa HOM05D000292 ORTHO05D000172 3.2e-10 69.3 65 46.2
AT5G43240 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 5.4e-10 68.6 72 45.8
AL1G22160 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 7.1e-10 68.2 144 34.0
Aa31LG1G3760 Aethionema arabicum HOM05D000292 ORTHO05D000172 9.2e-10 67.8 62 48.4
Solyc09g011890.1 Solanum lycopersicum HOM05D000292 ORTHO05D000172 9.2e-10 67.8 151 32.5
AL638U10010 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.2e-09 67.4 107 38.3
BcaNung02764 Brassica carinata HOM05D000292 ORTHO05D000172 1.2e-09 67.4 64 45.3
BcaC03g18457 Brassica carinata HOM05D000292 ORTHO05D000172 1.6e-09 67.0 77 42.9
C02p08040 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-09 67.0 77 42.9
C09p74530 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-09 67.0 65 44.6
BolC2t06726H Brassica oleracea HOM05D000292 ORTHO05D000172 1.6e-09 67.0 77 42.9
BolC9t60185H Brassica oleracea HOM05D000292 ORTHO05D000172 1.6e-09 67.0 65 44.6
Aa31LG1G3750 Aethionema arabicum HOM05D000292 ORTHO05D000172 2.1e-09 66.6 89 37.1
AL1G22150 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.1e-09 66.6 76 43.4
C07p58610 Brassica napus HOM05D000292 ORTHO05D000172 2.1e-09 66.6 61 47.5
BolC6t39478H Brassica oleracea HOM05D000292 ORTHO05D000172 2.7e-09 66.2 192 29.2
Aa31LG1G3020 Aethionema arabicum HOM05D000292 ORTHO05D000172 3.5e-09 65.9 77 44.2
Sp7g01570 Schrenkiella parvula HOM05D000292 ORTHO05D000172 3.5e-09 65.9 59 55.9
AT5G01130 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 7.8e-09 64.7 89 41.6
BcaNung05567 Brassica carinata HOM05D000292 ORTHO05D000172 7.8e-09 64.7 65 44.6
A02p03280 Brassica napus HOM05D000292 ORTHO05D000172 7.8e-09 64.7 79 40.5
CARHR083490 Cardamine hirsuta HOM05D000292 ORTHO05D000172 7.8e-09 64.7 56 62.5
BraA02t05298Z Brassica rapa HOM05D000292 ORTHO05D000172 1.0e-08 64.3 77 41.6
Carub.0001s1073 Capsella rubella HOM05D000292 ORTHO05D000172 1.0e-08 64.3 64 45.3
A05p39760 Brassica napus HOM05D000292 ORTHO05D000172 1.7e-08 63.5 55 52.7
AT3G09140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 2.3e-08 63.2 76 39.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.3e-08 63.2 61 52.5
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.3e-08 63.2 61 52.5
Carub.0001s1072 Capsella rubella HOM05D000292 ORTHO05D000172 2.3e-08 63.2 76 42.1
Thhalv10019708m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 2.3e-08 63.2 61 50.8
THA.LOC104816224 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 2.3e-08 63.2 77 40.3
C04p46830 Brassica napus HOM05D000292 ORTHO05D000172 3.0e-08 62.8 109 33.0
BolC4t26271H Brassica oleracea HOM05D000292 ORTHO05D000172 3.0e-08 62.8 109 33.0
BraA10t45392Z Brassica rapa HOM05D000292 ORTHO05D000172 3.0e-08 62.8 73 47.9
Phvul.010G007500 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 3.0e-08 62.8 79 41.8
BcaNung05571 Brassica carinata HOM05D000292 ORTHO05D000172 3.9e-08 62.4 141 31.9
C05p15900 Brassica napus HOM05D000292 ORTHO05D000172 3.9e-08 62.4 141 31.9
BolC5t30294H Brassica oleracea HOM05D000292 ORTHO05D000172 3.9e-08 62.4 141 31.9
BcaNung02765 Brassica carinata HOM05D000292 ORTHO05D000172 5.1e-08 62.0 61 52.5
C06p36280 Brassica napus HOM05D000292 ORTHO05D000172 6.6e-08 61.6 56 51.8
BraA04t16967Z Brassica rapa HOM05D000292 ORTHO05D000172 6.6e-08 61.6 111 38.7
A04p13060 Brassica napus HOM05D000292 ORTHO05D000172 8.6e-08 61.2 111 38.7
A07p36650 Brassica napus HOM05D000292 ORTHO05D000172 8.6e-08 61.2 56 53.6
C05p58800 Brassica napus HOM05D000292 ORTHO05D000172 8.6e-08 61.2 55 49.1
TAR629G0505 Trochodendron aralioides HOM05D000292 ORTHO05D000172 8.6e-08 61.2 116 34.5
AL2G24510 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.1e-07 60.8 65 49.2
C06p44050 Brassica napus HOM05D000292 ORTHO05D000172 1.5e-07 60.5 56 53.6
BolC6t38750H Brassica oleracea HOM05D000292 ORTHO05D000172 1.5e-07 60.5 56 50.0
Thhalv10000435m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 1.5e-07 60.5 53 50.9
BraA05t22759Z Brassica rapa HOM05D000292 ORTHO05D000172 1.9e-07 60.1 55 50.9
BraA07t30755Z Brassica rapa HOM05D000292 ORTHO05D000172 1.9e-07 60.1 219 26.9
Gohir.A01G224650 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.9e-07 60.1 97 39.2
arahy.Tifrunner.gnm1.ann1.8PX07I Arachis hypogaea HOM05D000292 ORTHO05D000172 2.5e-07 59.7 70 40.0
arahy.Tifrunner.gnm1.ann1.X5IC73 Arachis hypogaea HOM05D000292 ORTHO05D000172 2.5e-07 59.7 61 44.3
BcaC08g45841 Brassica carinata HOM05D000292 ORTHO05D000172 2.5e-07 59.7 56 48.2
BcaNung02208 Brassica carinata HOM05D000292 ORTHO05D000172 3.3e-07 59.3 66 43.9
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 3.3e-07 59.3 61 49.2
Carub.0006s0074 Capsella rubella HOM05D000292 ORTHO05D000172 3.3e-07 59.3 55 52.7
BcaB03g15530 Brassica carinata HOM05D000292 ORTHO05D000172 4.3e-07 58.9 59 50.8
CARHR107070 Cardamine hirsuta HOM05D000292 ORTHO05D000172 4.3e-07 58.9 56 50.0
BcaB04g17548 Brassica carinata HOM05D000292 ORTHO05D016587 5.6e-07 58.5 140 30.7
A07p31220 Brassica napus HOM05D000292 ORTHO05D000172 5.6e-07 58.5 59 49.2
Thhalv10009971m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 5.6e-07 58.5 61 45.9
Lj3g0006069 Lotus japonicus HOM05D000292 ORTHO05D000172 7.3e-07 58.2 77 40.3
Prupe.6G064100 Prunus persica HOM05D000292 ORTHO05D000172 7.3e-07 58.2 70 47.1
BraA07t31233Z Brassica rapa HOM05D000292 ORTHO05D000172 9.5e-07 57.8 56 51.8
Thhalv10027836m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 9.5e-07 57.8 59 50.8
Gohir.A01G224600 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.6e-06 57.0 68 47.1
MBI07_g22861_MAGBIO Magnolia biondii HOM05D000292 ORTHO05D000172 2.1e-06 56.6 67 46.3
Rhsim11G0123500 Rhododendron simsii HOM05D000292 ORTHO05D000172 2.1e-06 56.6 124 33.9
Glyma.01G110100 Glycine max HOM05D000292 ORTHO05D000172 2.8e-06 56.2 73 41.1
Dinv20936 Davidia involucrata HOM05D000292 ORTHO05D000172 3.6e-06 55.8 64 46.9
Dinv21007 Davidia involucrata HOM05D000292 ORTHO05D000172 3.6e-06 55.8 64 46.9
RcHm_v2.0_Chr5g0067671 Rosa chinensis HOM05D000292 ORTHO05D000172 3.6e-06 55.8 65 46.2
RcHm_v2.0_Chr5g0067721 Rosa chinensis HOM05D000292 ORTHO05D000172 4.7e-06 55.5 68 42.6
Sp1g34300 Schrenkiella parvula HOM05D000292 ORTHO05D000172 4.7e-06 55.5 76 42.1
FvH4_6g48430 Fragaria vesca HOM05D000292 ORTHO05D000172 6.2e-06 55.1 69 40.6
FAN14G5187 Fragaria x ananassa HOM05D000292 ORTHO05D000172 6.2e-06 55.1 69 40.6
Gohir.A01G224500 Gossypium hirsutum HOM05D000292 ORTHO05D000172 6.2e-06 55.1 85 41.2
MD11G1083300 Malus domestica HOM05D000292 ORTHO05D000172 6.2e-06 55.1 80 38.8
Aqoxy1G00750 Aquilegia oxysepala HOM05D000292 ORTHO05D000172 8.1e-06 54.7 78 41.0
AL3G20200 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.1e-06 54.7 54 51.9
Dinv17078 Davidia involucrata HOM05D000292 ORTHO05D000172 8.1e-06 54.7 63 46.0
Dinv43022 Davidia involucrata HOM05D000292 ORTHO05D000172 8.1e-06 54.7 63 46.0
Dinv43076 Davidia involucrata HOM05D000292 ORTHO05D000172 8.1e-06 54.7 63 46.0
Gohir.D01G214100 Gossypium hirsutum HOM05D000292 ORTHO05D000172 8.1e-06 54.7 58 50.0
MBI07_g27007_MAGBIO Magnolia biondii HOM05D000292 ORTHO05D000846 8.1e-06 54.7 67 44.8
MBI07_g27011_MAGBIO Magnolia biondii HOM05D000292 ORTHO05D000172 8.1e-06 54.7 67 44.8
Prupe.6G064000 Prunus persica HOM05D000292 ORTHO05D000172 8.1e-06 54.7 61 45.9


User provided reference genes

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