Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 7.7e-71 270.4 138 100.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 1.7e-57 226.1 138 86.2
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 1.7e-57 226.1 138 86.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.7e-57 224.9 138 86.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 8.2e-57 223.8 138 85.5
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 3.1e-56 221.9 138 84.1
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 9.1e-56 220.3 138 83.3
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 9.1e-56 220.3 138 82.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 1.5e-55 219.5 138 82.6
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.0e-55 219.2 138 83.3
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 2.6e-55 218.8 138 82.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 2.6e-55 218.8 138 82.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 6.5e-54 214.2 138 81.9
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 6.7e-51 204.1 138 76.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.6e-50 202.2 138 76.8
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 5.7e-50 201.1 138 76.8
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 5.7e-50 201.1 138 76.1
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 7.4e-50 200.7 138 76.8
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 9.7e-50 200.3 138 76.1
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 1.3e-49 199.9 138 74.6
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 2.2e-49 199.1 138 73.9
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 2.2e-49 199.1 138 75.4
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 2.2e-49 199.1 138 73.9
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 3.7e-49 198.4 138 75.4
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 3.7e-49 198.4 138 74.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 6.3e-49 197.6 138 73.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 1.1e-48 196.8 138 73.2
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 1.1e-48 196.8 138 74.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 1.1e-48 196.8 138 74.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 1.4e-48 196.4 138 73.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 1.8e-48 196.1 138 74.6
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 2.4e-48 195.7 138 73.9
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 3.1e-48 195.3 138 72.5
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 4.1e-48 194.9 138 74.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 4.1e-48 194.9 138 72.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 5.3e-48 194.5 138 73.2
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 5.3e-48 194.5 138 73.9
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 7.0e-48 194.1 138 76.1
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 9.1e-48 193.7 138 73.9
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 9.1e-48 193.7 138 73.2
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 71.0
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 73.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 71.7
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 73.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 73.2
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 1.2e-47 193.4 138 73.2
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 1.6e-47 193.0 138 71.7
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.0e-47 192.6 138 72.5
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 2.0e-47 192.6 138 72.5
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 2.0e-47 192.6 139 72.7
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 2.6e-47 192.2 138 70.3
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 2.6e-47 192.2 138 72.5
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 5.9e-47 191.0 138 71.0
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 7.7e-47 190.7 138 71.7
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 7.7e-47 190.7 138 71.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 1.0e-46 190.3 138 70.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.3e-46 189.9 138 71.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 1.3e-46 189.9 138 71.0
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 1.3e-46 189.9 138 74.6
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 3.8e-46 188.3 138 71.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 5.0e-46 188.0 138 69.6
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 5.0e-46 188.0 138 68.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 8.5e-46 187.2 138 71.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 1.9e-45 186.0 138 73.9
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 1.9e-45 186.0 138 73.9
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.9e-45 186.0 138 69.6
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 2.5e-45 185.7 138 70.3
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 3.2e-45 185.3 138 72.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 3.2e-45 185.3 138 72.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 3.2e-45 185.3 138 68.8
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 4.2e-45 184.9 139 70.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 4.2e-45 184.9 138 70.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 7.2e-45 184.1 138 71.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 9.4e-45 183.7 138 67.4
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 9.4e-45 183.7 138 71.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 9.4e-45 183.7 138 69.6
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 9.4e-45 183.7 138 70.3
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 1.2e-44 183.3 138 71.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 1.2e-44 183.3 138 69.6
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 1.2e-44 183.3 138 71.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.6e-44 183.0 138 69.6
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 2.1e-44 182.6 138 69.6
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 2.1e-44 182.6 138 71.7
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 2.7e-44 182.2 138 71.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 2.7e-44 182.2 138 70.3
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 3.6e-44 181.8 157 64.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.6e-44 181.8 138 68.1
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 6.1e-44 181.0 138 70.3
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 1.0e-43 180.3 138 67.4
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 1.0e-43 180.3 138 71.0
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 1.0e-43 180.3 138 70.3
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 2.3e-43 179.1 138 68.8
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 3.0e-43 178.7 138 68.1
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 5.2e-43 177.9 138 68.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 1.2e-42 176.8 138 68.1
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 2.0e-42 176.0 138 68.1
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 2.0e-39 166.0 138 64.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.1e-37 160.2 139 55.4
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.2e-37 158.7 117 66.7
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 5.5e-37 157.9 142 58.5
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.4e-35 153.3 139 55.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.8e-35 152.9 119 65.5
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 6.8e-35 151.0 139 56.1
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 8.8e-35 150.6 117 66.7
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.6e-34 149.1 125 64.0
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 9.8e-34 147.1 125 63.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.7e-33 146.4 142 53.5
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-31 139.4 138 52.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.0e-31 139.4 138 52.2
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 3.5e-31 138.7 97 74.2
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.5e-31 138.3 138 51.4
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.0e-30 134.8 138 50.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 4.7e-28 128.3 95 67.4
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 4.0e-27 125.2 140 48.6
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 2.0e-23 112.8 129 55.0
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 2.8e-20 102.4 75 66.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.8e-19 99.8 76 64.5
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 2.0e-18 96.3 59 78.0
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.1e-16 90.5 67 71.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 6.0e-15 84.7 143 39.2
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.2e-12 77.0 64 59.4
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.6e-10 69.3 183 29.5
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-07 59.7 66 48.5


User provided reference genes

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