Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 5.3e-207 724.2 376 100.0
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 3.6e-171 605.1 377 86.2
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 8.8e-170 600.5 377 85.1
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.0e-162 577.0 365 84.4
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.3e-154 549.3 383 78.6
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.3e-149 533.5 383 77.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 2.1e-147 526.2 377 77.2
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 2.1e-147 526.2 377 77.2
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 6.1e-147 524.6 377 76.9
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 6.1e-147 524.6 393 74.0
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 2.2e-144 516.2 394 74.1
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 3.6e-139 498.8 377 74.5
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 8.9e-138 494.2 393 71.8
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 6.4e-136 488.0 385 73.2
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 4.3e-132 475.3 394 70.1
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 7.6e-121 438.0 283 83.4
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 3.9e-109 399.1 411 61.6
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 4.6e-102 375.6 378 61.9
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.6e-78 297.4 381 51.4
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 2.0e-41 174.1 413 35.4
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 2.9e-40 170.2 371 36.9
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.5e-39 167.2 414 35.5
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 7.2e-39 165.6 344 36.9
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 2.7e-38 163.7 449 33.0
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 4.7e-38 162.9 368 36.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 4.7e-38 162.9 398 34.7
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.5e-36 157.9 329 37.4
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 3.4e-36 156.8 379 35.4
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 9.8e-36 155.2 333 35.7
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.2e-35 154.1 348 35.3
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.7e-35 153.3 379 35.6
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 3.7e-35 153.3 412 33.0
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 8.3e-35 152.1 341 37.8
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 1.1e-34 151.8 338 35.5
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.4e-34 151.4 326 36.2
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.4e-34 151.4 330 37.0
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.8e-34 151.0 365 35.1
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 4.5e-33 146.4 326 35.6
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 6.6e-32 142.5 431 32.5
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 2.5e-31 140.6 346 34.4
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 2.5e-31 140.6 342 33.9
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.5e-31 140.6 331 36.3
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 4.3e-31 139.8 447 30.4
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 9.5e-31 138.7 216 40.7
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.2e-30 138.3 465 30.5
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.4e-29 134.8 372 33.6
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 3.4e-28 130.2 409 30.1
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 4.4e-28 129.8 414 29.7
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.7e-27 126.7 374 32.1
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 3.2e-26 123.6 348 33.9
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 1.7e-24 117.9 372 32.3
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 3.0e-24 117.1 404 28.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 6.6e-24 115.9 421 30.6
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 7.3e-23 112.5 407 30.0
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 1.6e-22 111.3 313 33.9
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.1e-22 110.9 433 28.4
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 6.2e-22 109.4 328 31.7
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 6.2e-22 109.4 398 29.9
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.8e-21 107.8 447 28.2
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.3e-21 107.5 457 26.3
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.1e-21 107.1 340 30.3
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 6.8e-21 105.9 441 27.4
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 8.9e-21 105.5 384 29.4
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 8.9e-21 105.5 387 29.2
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.0e-20 104.4 358 31.6
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 2.0e-20 104.4 403 29.8
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 2.0e-20 104.4 367 29.4
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.4e-20 103.6 356 30.9
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 2.2e-19 100.9 170 38.2
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 6.4e-19 99.4 393 28.8
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 8.3e-19 99.0 368 29.6
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 2.4e-18 97.4 405 29.1
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 3.2e-18 97.1 363 28.4
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 9.2e-18 95.5 298 32.2
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 1.2e-17 95.1 481 26.8
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 4.6e-17 93.2 282 31.9
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.7e-16 91.3 390 27.9
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 5.0e-16 89.7 364 29.7
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 5.0e-16 89.7 317 32.2
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.1e-15 88.6 384 27.3
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.9e-15 87.8 411 27.5
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 2.5e-15 87.4 327 29.7
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 4.3e-15 86.7 377 27.1
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 7.3e-15 85.9 422 27.0
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 3.6e-14 83.6 237 31.2
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.6e-14 83.6 404 25.0
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 8.1e-14 82.4 298 27.9
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 2.3e-13 80.9 441 25.9
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.4e-12 77.0 401 28.4
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 4.4e-12 76.6 203 33.5
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 9.8e-12 75.5 362 29.0
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.3e-11 75.1 229 31.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 8.3e-11 72.4 547 23.0
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.4e-10 71.6 297 27.6
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.9e-10 71.2 355 27.0
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 7.1e-10 69.3 143 33.6
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 7.1e-10 69.3 300 27.7
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 9.2e-10 68.9 201 32.8
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.2e-09 68.6 507 24.9
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 2.7e-09 67.4 374 25.1
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.0e-08 65.5 472 24.2
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.7e-08 64.7 255 28.2
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.3e-08 64.3 154 37.0
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 3.0e-08 63.9 192 32.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 5.1e-08 63.2 381 26.2
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.1e-08 63.2 157 29.3
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.1e-08 63.2 245 28.6
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 6.6e-08 62.8 252 29.0
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.6e-08 62.4 425 25.6
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 8.6e-08 62.4 123 34.1
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 1.1e-07 62.0 381 26.2
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.1e-07 62.0 460 22.4
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.5e-07 61.6 115 38.3
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 4.3e-07 60.1 380 26.3
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 5.6e-07 59.7 152 36.8
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 5.6e-07 59.7 152 36.8
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.6e-07 59.7 434 24.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 5.6e-07 59.7 145 29.0
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 7.3e-07 59.3 224 30.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.5e-07 58.9 205 27.8
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 1.2e-06 58.5 91 40.7
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.6e-06 58.2 153 31.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.6e-06 57.0 161 30.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.6e-06 57.0 162 29.6
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 4.7e-06 56.6 125 35.2
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 4.7e-06 56.6 72 44.4
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.2e-06 56.2 205 27.8
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 8.1e-06 55.8 123 35.8


User provided reference genes

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