Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 2.4e-130 468.8 225 100.0
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 2.1e-73 279.6 145 93.8
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 1.3e-72 276.9 149 90.6
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 5.6e-71 271.6 145 91.0
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 9.6e-71 270.8 144 91.7
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 2.8e-70 269.2 144 91.0
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 1.8e-69 266.5 152 88.2
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 9.0e-37 157.9 144 52.8
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 2.9e-35 152.9 144 50.7
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 1.1e-29 134.4 144 47.9
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 2.9e-27 126.3 139 46.0
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-26 124.4 141 46.8
Carub.0002s1014 Capsella rubella HOM05D003554 ORTHO05D005130 1.1e-26 124.4 99 55.6
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-26 124.0 145 43.4
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 1.4e-26 124.0 145 43.4
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 2.5e-26 123.2 145 43.4
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 3.2e-26 122.9 136 47.8
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 3.2e-26 122.9 145 43.4
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 1.6e-25 120.6 145 42.8
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 2.7e-25 119.8 141 45.4
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 4.6e-25 119.0 138 42.0
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 6.1e-25 118.6 141 44.7
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 6.1e-25 118.6 141 44.7
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.9e-25 118.2 229 30.6
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 6.7e-24 115.2 144 43.1
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 1.1e-23 114.4 145 41.4
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 1.5e-23 114.0 138 44.2
Carub.0002s1016 Capsella rubella HOM05D003554 ORTHO05D005130 4.3e-23 112.5 82 59.8
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.3e-22 110.9 212 32.1
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 3.7e-22 109.4 142 43.0
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 1.8e-21 107.1 142 41.5
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 1.2e-20 104.4 160 37.5
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.6e-20 103.2 135 42.2
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 3.4e-20 102.8 123 44.7
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 3.4e-20 102.8 128 39.8
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 3.4e-20 102.8 128 39.8
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 7.7e-20 101.7 128 39.8
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 7.7e-20 101.7 128 39.8
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 1.0e-19 101.3 128 39.1
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.3e-19 100.9 216 30.6
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 1.3e-19 100.9 114 43.0
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 1.7e-19 100.5 138 37.7
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 1.7e-19 100.5 138 37.7
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 5.0e-19 99.0 128 39.1
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 6.5e-19 98.6 128 38.3
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 8.5e-19 98.2 127 40.9
BcaB02g11366 Brassica carinata HOM05D007984 ORTHO05D013027 1.4e-18 97.4 142 39.4
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 2.5e-18 96.7 128 39.1
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 3.2e-18 96.3 143 35.7
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 5.5e-18 95.5 145 37.9
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 2.1e-17 93.6 118 42.4
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 4.7e-17 92.4 144 36.1
BcaB03g16118 Brassica carinata HOM05D003554 ORTHO05D005130 1.0e-16 91.3 153 37.3
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 2.3e-16 90.1 169 33.1
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 3.9e-16 89.4 128 35.9
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 5.1e-16 89.0 128 35.2
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 8.8e-16 88.2 123 40.7
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 1.1e-15 87.8 250 29.2
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.5e-15 87.4 136 38.2
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 2.0e-15 87.0 125 36.8
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 3.3e-15 86.3 181 34.8
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 4.4e-15 85.9 143 35.0
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.4e-15 85.1 123 39.0
Aa31LG6G9990 Aethionema arabicum HOM05D003554 ORTHO05D005130 7.4e-15 85.1 111 39.6
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 9.7e-15 84.7 114 41.2
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 9.7e-15 84.7 86 52.3
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 1.3e-14 84.3 201 32.8
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 2.2e-14 83.6 161 31.7
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 6.3e-14 82.0 169 32.0
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 4.1e-13 79.3 230 29.6
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 1.6e-12 77.4 116 36.2
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 2.0e-12 77.0 79 48.1
BcaB03g16082 Brassica carinata HOM05D026233 ORTHO05D005130 2.6e-12 76.6 85 47.1
THA.LOC109116563 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 3.5e-12 76.3 136 33.8
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.5e-12 75.9 212 25.5
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 5.9e-12 75.5 79 46.8
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 1.3e-11 74.3 79 48.1
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 5.0e-11 72.4 79 45.6
BcaB05g23427 Brassica carinata HOM05D011584 ORTHO05D008395 8.5e-11 71.6 67 59.7
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 8.5e-11 71.6 79 44.3
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 5.5e-10 68.9 122 35.2
Thhalv10000512m.g Eutrema salsugineum HOM05D003554 ORTHO05D005130 5.5e-10 68.9 68 47.1
BcaB01g01146 Brassica carinata HOM05D003554 ORTHO05D005130 9.4e-10 68.2 75 44.0
BcaB02g11309 Brassica carinata HOM05D011584 ORTHO05D093207 1.6e-09 67.4 65 56.9
AT2G06420 Arabidopsis thaliana HOM05D003554 ORTHO05D005130 4.7e-09 65.9 153 30.1
BcaB08g35294 Brassica carinata HOM05D011584 ORTHO05D094600 6.1e-09 65.5 65 58.5
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 8.0e-09 65.1 100 40.0
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 1.0e-08 64.7 80 50.0
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 1.4e-08 64.3 105 42.9
C08p07220 Brassica napus HOM05D008316 ORTHO05D017243 5.2e-08 62.4 88 39.8
CARHR049310 Cardamine hirsuta HOM05D003554 ORTHO05D005130 6.7e-08 62.0 54 50.0
THA.LOC109116427 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 8.8e-08 61.6 144 31.9
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 1.1e-07 61.2 80 47.5
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 1.5e-07 60.8 79 48.1
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 2.0e-07 60.5 68 47.1
Aa31sc318G10 Aethionema arabicum HOM05D028239 ORTHO05D005130 3.3e-07 59.7 91 35.2
THA.LOC104809668 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 4.4e-07 59.3 126 31.7
BNapus_Darmor_BZH_scaffold_167p00060 Brassica napus HOM05D003554 ORTHO05D005130 7.5e-07 58.5 57 47.4
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 9.7e-07 58.2 80 45.0
C05p06190 Brassica napus HOM05D003554 ORTHO05D005130 9.7e-07 58.2 55 47.3
BraA05t21895Z Brassica rapa HOM05D004128 ORTHO05D008395 9.7e-07 58.2 49 49.0
BcaB08g35153 Brassica carinata HOM05D007984 ORTHO05D013027 1.7e-06 57.4 75 44.0
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 1.7e-06 57.4 71 43.7
THA.LOC104820187 Tarenaya hassleriana HOM05D003554 ORTHO05D005130 2.2e-06 57.0 139 28.8
C03p67190 Brassica napus HOM05D003554 ORTHO05D005130 2.8e-06 56.6 77 37.7
C06p00220 Brassica napus HOM05D003554 ORTHO05D005130 2.8e-06 56.6 77 37.7
BolC5t32273H Brassica oleracea HOM05D003554 ORTHO05D005130 2.8e-06 56.6 77 37.7
BolC3t18729H Brassica oleracea HOM05D004128 ORTHO05D008395 3.7e-06 56.2 48 47.9
BolC9t53917H Brassica oleracea HOM05D008062 ORTHO05D011707 3.7e-06 56.2 48 47.9
BraA05t20613Z Brassica rapa HOM05D008062 ORTHO05D008395 3.7e-06 56.2 48 47.9
BraA07t28446Z Brassica rapa HOM05D003554 ORTHO05D005130 3.7e-06 56.2 61 39.3
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 4.8e-06 55.8 80 43.8
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 6.3e-06 55.5 80 43.8
BcaC03g13667 Brassica carinata HOM05D007984 ORTHO05D039917 6.3e-06 55.5 78 46.2
Aa31sc137G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 8.2e-06 55.1 87 35.6
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 8.2e-06 55.1 71 40.8


User provided reference genes

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