Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23478 Brassica carinata HOM05D031200 ORTHO05D001546 1.1e-41 172.9 88 100.0
BcaB06g26847 Brassica carinata HOM05D000200 ORTHO05D001546 2.8e-18 95.1 52 92.3
Sp1g37190 Schrenkiella parvula HOM05D000200 ORTHO05D001546 1.6e-13 79.3 51 78.4
BcaC04g20725 Brassica carinata HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
A06p03200 Brassica napus HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
C06p05470 Brassica napus HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
C06p05490 Brassica napus HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
BolC6t35648H Brassica oleracea HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
BolC6t35649H Brassica oleracea HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
BolC6t35654H Brassica oleracea HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
BraA06t23531Z Brassica rapa HOM05D000200 ORTHO05D001546 6.1e-13 77.4 51 76.5
C06p05430 Brassica napus HOM05D000200 ORTHO05D001546 2.3e-12 75.5 51 74.5
AL1G58000 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 3.9e-12 74.7 49 77.6
AT1G50360 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 3.9e-12 74.7 49 77.6
Carub.0001s3944 Capsella rubella HOM05D000200 ORTHO05D001546 3.9e-12 74.7 49 77.6
CARHR040370 Cardamine hirsuta HOM05D000200 ORTHO05D001546 3.9e-12 74.7 49 77.6
Thhalv10011193m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 3.9e-12 74.7 52 76.9
Aa31LG10G3920 Aethionema arabicum HOM05D000200 ORTHO05D001546 4.8e-10 67.8 50 70.0
BcaC05g27444 Brassica carinata HOM05D000200 ORTHO05D001546 1.1e-09 66.6 51 72.5
A05p20250 Brassica napus HOM05D000200 ORTHO05D001546 1.1e-09 66.6 51 72.5
C05p33980 Brassica napus HOM05D000200 ORTHO05D001546 1.1e-09 66.6 51 72.5
BolC5t32133H Brassica oleracea HOM05D000200 ORTHO05D001546 1.1e-09 66.6 51 72.5
BraA05t20935Z Brassica rapa HOM05D000200 ORTHO05D001546 1.1e-09 66.6 51 72.5
BcaB02g11133 Brassica carinata HOM05D000200 ORTHO05D001546 3.1e-09 65.1 51 70.6
C01p18100 Brassica napus HOM05D031200 ORTHO05D032568 1.5e-08 62.8 54 61.1
BolC1t01738H Brassica oleracea HOM05D031200 ORTHO05D032568 1.5e-08 62.8 54 61.1
THA.LOC104801596 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 1.0e-07 60.1 53 58.5
Phvul.007G014600 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 1.3e-07 59.7 54 61.1
arahy.Tifrunner.gnm1.ann1.L4L3GZ Arachis hypogaea HOM05D000200 ORTHO05D001546 1.7e-07 59.3 46 63.0
arahy.Tifrunner.gnm1.ann1.PP514R Arachis hypogaea HOM05D000200 ORTHO05D001546 1.7e-07 59.3 46 63.0
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.7e-07 59.3 45 64.4
Glyma.20G102900 Glycine max HOM05D000200 ORTHO05D001546 1.7e-07 59.3 46 63.0
Nitab4.5_0000146g0020 Nicotiana tabacum HOM05D000200 ORTHO05D001546 1.7e-07 59.3 51 58.8
Nitab4.5_0001258g0020 Nicotiana tabacum HOM05D000200 ORTHO05D001546 1.7e-07 59.3 51 58.8
VMungo0720G1272 Vigna mungo HOM05D000200 ORTHO05D001546 1.7e-07 59.3 46 63.0
Atru.chr11.1236 Acer truncatum HOM05D000200 ORTHO05D001546 2.2e-07 58.9 54 55.6
CSS0039822 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 2.2e-07 58.9 45 64.4
HanXRQChr16g0526111 Helianthus annuus HOM05D000200 ORTHO05D001546 2.2e-07 58.9 45 64.4
Lj3A846G61 Lonicera japonica HOM05D000200 ORTHO05D001546 2.2e-07 58.9 50 56.0
Lalb_Chr10g0094881 Lupinus albus HOM05D000200 ORTHO05D001546 2.2e-07 58.9 46 60.9
Medtr1g114540 Medicago truncatula HOM05D000200 ORTHO05D001546 2.2e-07 58.9 46 60.9
Psat6g100120 Pisum sativum HOM05D000200 ORTHO05D001546 2.2e-07 58.9 46 63.0
Psat6g233720 Pisum sativum HOM05D000200 ORTHO05D001546 2.2e-07 58.9 46 60.9
TPR.G4106 Trifolium pratense HOM05D000200 ORTHO05D001546 2.2e-07 58.9 46 60.9
Aa31LG8G6700 Aethionema arabicum HOM05D000200 ORTHO05D001546 2.9e-07 58.5 48 60.4
BcaC09g51004 Brassica carinata HOM05D031200 ORTHO05D032568 2.9e-07 58.5 33 84.8
A03p41500 Brassica napus HOM05D000200 ORTHO05D001546 2.9e-07 58.5 45 64.4
C03p50820 Brassica napus HOM05D000200 ORTHO05D001546 2.9e-07 58.5 45 64.4
BolC3t17366H Brassica oleracea HOM05D000200 ORTHO05D001546 2.9e-07 58.5 45 64.4
BraA03t13304Z Brassica rapa HOM05D000200 ORTHO05D001546 2.9e-07 58.5 45 64.4
Cpa.g.sc60.82 Carica papaya HOM05D000200 ORTHO05D001546 2.9e-07 58.5 50 58.0
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 2.9e-07 58.5 54 59.3
Glyma.10G286300 Glycine max HOM05D000200 ORTHO05D001546 2.9e-07 58.5 46 60.9
Sc10g0006880 Simmondsia chinensis HOM05D000200 ORTHO05D001546 2.9e-07 58.5 50 58.0
Gohir.A03G166200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 3.8e-07 58.2 54 59.3
THA.LOC104826514 Tarenaya hassleriana HOM05D000200 ORTHO05D001546 3.8e-07 58.2 48 58.3
TAR629G2757 Trochodendron aralioides HOM05D000200 ORTHO05D001546 3.8e-07 58.2 68 48.5
AL3G33610 Arabidopsis lyrata HOM05D000200 ORTHO05D001546 5.0e-07 57.8 47 61.7
Carub.0003s1986 Capsella rubella HOM05D000200 ORTHO05D001546 5.0e-07 57.8 47 61.7
CARHR095490 Cardamine hirsuta HOM05D000200 ORTHO05D001546 5.0e-07 57.8 47 61.7
Ca_12382_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 5.0e-07 57.8 46 60.9
Ca_12389_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 5.0e-07 57.8 46 60.9
Gohir.D02G189400 Gossypium hirsutum HOM05D000200 ORTHO05D001546 5.0e-07 57.8 45 64.4
Gorai.005G212100 Gossypium raimondii HOM05D000200 ORTHO05D001546 5.0e-07 57.8 45 64.4
CSS0011464 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D001546 6.5e-07 57.4 45 62.2
ECA234G0053 Erigeron canadensis HOM05D000200 ORTHO05D001546 6.5e-07 57.4 45 62.2
Hma1.2p1_0044F.1_g026280 Hydrangea macrophylla HOM05D000200 ORTHO05D001546 6.5e-07 57.4 50 56.0
Lj2g0009687 Lotus japonicus HOM05D000200 ORTHO05D001546 6.5e-07 57.4 46 60.9
Peaxi162Scf00334g00120 Petunia axillaris HOM05D000200 ORTHO05D001546 6.5e-07 57.4 59 55.9
Sp3g17980 Schrenkiella parvula HOM05D000200 ORTHO05D001546 6.5e-07 57.4 47 61.7
Actinidia23692 Actinidia chinensis HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
BcaB06g26065 Brassica carinata HOM05D000200 ORTHO05D001546 8.5e-07 57.0 47 59.6
BcaC05g28391 Brassica carinata HOM05D000200 ORTHO05D001546 8.5e-07 57.0 39 71.8
A05p29180 Brassica napus HOM05D000200 ORTHO05D001546 8.5e-07 57.0 39 71.8
C05p44670 Brassica napus HOM05D000200 ORTHO05D001546 8.5e-07 57.0 39 71.8
BolC5t33195H Brassica oleracea HOM05D000200 ORTHO05D001546 8.5e-07 57.0 39 71.8
BraA05t21802Z Brassica rapa HOM05D000200 ORTHO05D001546 8.5e-07 57.0 39 71.8
CAN.G912.8 Capsicum annuum HOM05D000200 ORTHO05D001546 8.5e-07 57.0 56 51.8
COL.COLO4_33104 Corchorus olitorius HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
Dinv13015 Davidia involucrata HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
Duzib132G0767 Durio zibethinus HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
Thhalv10019925m.g Eutrema salsugineum HOM05D000200 ORTHO05D001546 8.5e-07 57.0 47 59.6
FvH4_4g37130 Fragaria vesca HOM05D000200 ORTHO05D001546 8.5e-07 57.0 48 64.6
FAN12G3959 Fragaria x ananassa HOM05D000200 ORTHO05D001546 8.5e-07 57.0 48 64.6
Gohir.A12G132200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
Lj5g0006945 Lotus japonicus HOM05D000200 ORTHO05D001546 8.5e-07 57.0 46 58.7
MD13G1003300 Malus domestica HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 64.4
Manes.04G064300 Manihot esculenta HOM05D000200 ORTHO05D001546 8.5e-07 57.0 46 60.9
Medtr1g038793 Medicago truncatula HOM05D000200 ORTHO05D001546 8.5e-07 57.0 46 60.9
QL03p045482 Quercus lobata HOM05D000200 ORTHO05D001546 8.5e-07 57.0 74 44.6
Sopen02g004940 Solanum pennellii HOM05D000200 ORTHO05D001546 8.5e-07 57.0 56 51.8
Thecc.02G154900 Theobroma cacao HOM05D000200 ORTHO05D001546 8.5e-07 57.0 45 62.2
TPR.G20487 Trifolium pratense HOM05D000200 ORTHO05D001546 8.5e-07 57.0 46 60.9
Zm00001eb221190 Zea mays HOM05D000200 ORTHO05D001546 8.5e-07 57.0 51 58.8
AT3G19960 Arabidopsis thaliana HOM05D000200 ORTHO05D001546 1.1e-06 56.6 61 52.5
FAN07G1663 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.1e-06 56.6 48 64.6
FAN17G1852 Fragaria x ananassa HOM05D000200 ORTHO05D001546 1.1e-06 56.6 48 64.6
Potri.005G089200 Populus trichocarpa HOM05D000200 ORTHO05D001546 1.1e-06 56.6 46 58.7
Prupe.1G349100 Prunus persica HOM05D000200 ORTHO05D001546 1.1e-06 56.6 46 60.9
RcHm_v2.0_Chr4g0446931 Rosa chinensis HOM05D000200 ORTHO05D001546 1.1e-06 56.6 48 64.6
Zm00001eb045250 Zea mays HOM05D000200 ORTHO05D001546 1.1e-06 56.6 49 55.1
Ciclev10030552m.g Citrus clementina HOM05D000200 ORTHO05D001546 1.4e-06 56.2 45 62.2
Haze_11787 Corylus avellana HOM05D000200 ORTHO05D001546 1.4e-06 56.2 45 60.0
Glyma.09G284800 Glycine max HOM05D000200 ORTHO05D001546 1.4e-06 56.2 46 60.9
Glyma.20G001300 Glycine max HOM05D000200 ORTHO05D001546 1.4e-06 56.2 46 60.9
Lalb_Chr02g0143641 Lupinus albus HOM05D000200 ORTHO05D001546 1.4e-06 56.2 48 60.4
MD16G1004100 Malus domestica HOM05D000200 ORTHO05D001546 1.4e-06 56.2 45 62.2
CANSAT78G0397 Cannabis sativa HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
CiPaw.05G171900 Carya illinoinensis HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.9e-06 55.8 53 58.5
Eucgr.G02585 Eucalyptus grandis HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
Gohir.A13G061800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
Gohir.D13G060200 Gossypium hirsutum HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
Gorai.013G068300 Gossypium raimondii HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
Nn3g18592 Nelumbo nucifera HOM05D000200 ORTHO05D001546 1.9e-06 55.8 45 60.0
PSO063G1244 Papaver somniferum HOM05D000200 ORTHO05D001546 1.9e-06 55.8 48 56.2
PSO782G3069 Papaver somniferum HOM05D000200 ORTHO05D001546 1.9e-06 55.8 48 56.2
CiPaw.06G062300 Carya illinoinensis HOM05D000200 ORTHO05D001546 2.5e-06 55.5 61 50.8
AUR62017730 Chenopodium quinoa HOM05D000200 ORTHO05D001546 2.5e-06 55.5 45 60.0
Cc11_g00550 Coffea canephora HOM05D000200 ORTHO05D001546 2.5e-06 55.5 45 60.0
Sabra05G0073400 Salix brachista HOM05D000200 ORTHO05D001546 2.5e-06 55.5 46 58.7
Sed0014373 Sechium edule HOM05D000200 ORTHO05D001546 2.5e-06 55.5 46 58.7
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 3.2e-06 55.1 55 50.9
ClCG02G014140 Citrullus lanatus HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 60.0
MELO3C011755.2 Cucumis melo HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 60.0
CsaV3_5G029000 Cucumis sativus L. HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 60.0
DCAR_023473 Daucus carota HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 60.0
DCAR_023474 Daucus carota HOM05D042326 ORTHO05D001546 3.2e-06 55.1 45 60.0
MBI03_g41224_MAGBIO Magnolia biondii HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 57.8
Nn4g25132 Nelumbo nucifera HOM05D000200 ORTHO05D001546 3.2e-06 55.1 45 57.8
vmacro15995 Vaccinium macrocarpon HOM05D000200 ORTHO05D001546 3.2e-06 55.1 46 56.5
Lj6C708G9 Lonicera japonica HOM05D000200 ORTHO05D001546 4.2e-06 54.7 49 55.1
Lj6C713G17 Lonicera japonica HOM05D000200 ORTHO05D001546 4.2e-06 54.7 49 55.1
Os10g0488800 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D001546 4.2e-06 54.7 45 55.6
Rhsim12G0089200 Rhododendron simsii HOM05D000200 ORTHO05D001546 4.2e-06 54.7 45 57.8
Sabra07G0063400 Salix brachista HOM05D000200 ORTHO05D001546 4.2e-06 54.7 45 60.0
unitig_26.g10598 Utricularia gibba HOM05D000200 ORTHO05D001546 4.2e-06 54.7 48 60.4
Cfa008775 Carpinus fangiana HOM05D000200 ORTHO05D001546 5.5e-06 54.3 45 57.8
Gohir.D12G135800 Gossypium hirsutum HOM05D000200 ORTHO05D001546 5.5e-06 54.3 45 60.0
Gorai.008G147000 Gossypium raimondii HOM05D000200 ORTHO05D001546 5.5e-06 54.3 45 60.0
Phvul.003G002200 Phaseolus vulgaris HOM05D000200 ORTHO05D001546 5.5e-06 54.3 46 58.7
SalBow2G3495 Salvia bowleyana HOM05D000200 ORTHO05D001546 5.5e-06 54.3 48 60.4
CDE07G0600 Ceratophyllum demersum HOM05D000200 ORTHO05D001546 7.2e-06 53.9 48 54.2
Lsat_1_v5_gn_4_27700 Lactuca sativa HOM05D000200 ORTHO05D001546 7.2e-06 53.9 50 58.0
VMungo0251G0678 Vigna mungo HOM05D000200 ORTHO05D001546 7.2e-06 53.9 46 56.5
CDE04G3051 Ceratophyllum demersum HOM05D000200 ORTHO05D001546 9.4e-06 53.5 53 52.8
Duzib052G0298 Durio zibethinus HOM05D000200 ORTHO05D001546 9.4e-06 53.5 45 60.0
PGR142G0570 Punica granatum HOM05D000200 ORTHO05D001546 9.4e-06 53.5 80 41.2
Hund08632 Selenicereus undatus HOM05D000200 ORTHO05D001546 9.4e-06 53.5 59 54.2
TWI53G0999 Tripterygium wilfordii HOM05D000200 ORTHO05D001546 9.4e-06 53.5 45 55.6
GSVIVG01034427001 Vitis vinifera HOM05D000200 ORTHO05D001546 9.4e-06 53.5 45 55.6


User provided reference genes

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