Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 1.0e-85 320.1 167 100.0
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 9.2e-79 297.0 167 93.4
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 9.2e-79 297.0 167 93.4
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 9.2e-79 297.0 167 93.4
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 3.5e-78 295.0 167 92.8
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 3.5e-78 295.0 167 92.8
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.6e-70 269.6 164 87.8
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 4.0e-66 255.0 170 81.2
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 5.3e-58 228.0 168 76.8
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 5.8e-57 224.6 167 73.7
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 1.4e-55 219.9 167 71.3
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 1.9e-55 219.5 164 75.0
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 3.5e-54 215.3 167 70.7
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 5.1e-53 211.5 167 70.1
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 1.4e-42 176.8 129 73.6
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 4.1e-42 175.3 166 60.2
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 4.1e-42 175.3 172 61.0
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 5.3e-42 174.9 161 62.1
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 9.0e-42 174.1 172 62.2
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.5e-41 173.3 126 73.8
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 1.5e-41 173.3 113 77.9
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 2.6e-41 172.6 126 73.0
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 3.4e-41 172.2 128 71.1
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 3.4e-41 172.2 132 69.7
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 5.9e-41 171.4 168 59.5
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 5.9e-41 171.4 165 59.4
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 7.6e-41 171.0 126 73.0
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 1.3e-40 170.2 164 62.2
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 1.3e-40 170.2 113 77.0
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 1.4e-39 166.8 112 75.9
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 1.9e-39 166.4 126 70.6
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 2.5e-39 166.0 122 72.1
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 3.2e-39 165.6 127 68.5
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 3.2e-39 165.6 119 72.3
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 4.2e-39 165.2 140 67.1
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 5.5e-39 164.9 143 64.3
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 5.5e-39 164.9 143 64.3
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 5.5e-39 164.9 162 59.3
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 7.2e-39 164.5 114 74.6
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 7.2e-39 164.5 103 78.6
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 1.2e-38 163.7 114 73.7
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.2e-38 163.7 143 63.6
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.1e-38 162.9 112 74.1
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 2.7e-38 162.5 139 63.3
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 4.6e-38 161.8 149 61.1
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 1.8e-37 159.8 141 65.2
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 1.8e-37 159.8 166 53.6
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 3.0e-37 159.1 113 74.3
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 3.9e-37 158.7 115 71.3
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 6.7e-37 157.9 171 58.5
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 8.8e-37 157.5 124 66.9
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 1.1e-36 157.1 120 72.5
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 1.5e-36 156.8 116 71.6
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 1.5e-36 156.8 136 64.7
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 1.9e-36 156.4 161 57.8
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 2.5e-36 156.0 144 62.5
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 3.3e-36 155.6 166 56.6
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 4.3e-36 155.2 111 71.2
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 4.3e-36 155.2 123 69.9
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 5.7e-36 154.8 109 69.7
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 5.7e-36 154.8 112 67.9
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 7.4e-36 154.5 116 70.7
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 1.7e-35 153.3 114 72.8
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 2.8e-35 152.5 114 69.3
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 2.8e-35 152.5 138 65.9
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 3.7e-35 152.1 154 57.1
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 3.7e-35 152.1 112 67.0
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 6.3e-35 151.4 154 56.5
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 1.4e-34 150.2 119 67.2
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 5.3e-34 148.3 112 67.0
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 5.3e-34 148.3 160 54.4
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 1.5e-33 146.7 145 57.2
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 3.4e-33 145.6 158 53.2
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 7.7e-33 144.4 133 61.7
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.0e-32 144.1 133 61.7
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 1.4e-31 140.2 130 60.0
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 1.4e-31 140.2 98 71.4
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 1.5e-28 130.2 102 71.6
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 7.4e-28 127.9 135 55.6
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 2.2e-27 126.3 121 54.5
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 9.1e-26 120.9 89 71.9
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 5.9e-25 118.2 84 78.6
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 7.7e-25 117.9 100 67.0
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 1.0e-24 117.5 172 47.7
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 2.2e-24 116.3 99 67.7
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 2.2e-24 116.3 99 66.7
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 2.2e-24 116.3 110 55.5
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 2.9e-24 115.9 133 46.6
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 2.9e-24 115.9 85 71.8
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 2.5e-23 112.8 72 68.1
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 7.2e-23 111.3 103 64.1
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 1.6e-22 110.2 100 62.0
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 1.0e-21 107.5 148 44.6
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 7.4e-20 101.3 135 44.4
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 1.7e-19 100.1 56 78.6
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 2.2e-19 99.8 120 45.8
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 1.8e-18 96.7 81 63.0
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 2.9e-16 89.4 151 43.7
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 7.2e-15 84.7 120 43.3
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 9.4e-15 84.3 119 41.2
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 1.2e-14 84.0 140 37.9
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 3.3e-12 75.9 72 56.9
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 8.2e-11 71.2 154 39.0
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 8.0e-06 54.7 114 36.8


User provided reference genes

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