Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23414 Brassica carinata HOM05D001812 ORTHO05D001874 1.3e-44 182.6 86 100.0
A02p35550 Brassica napus HOM05D001812 ORTHO05D001874 1.7e-23 112.5 60 86.7
BcaC03g17473 Brassica carinata HOM05D001812 ORTHO05D001874 6.3e-23 110.5 60 85.0
BraA02t08557Z Brassica rapa HOM05D001812 ORTHO05D001874 8.3e-23 110.2 60 85.0
BcaB07g30152 Brassica carinata HOM05D001812 ORTHO05D001874 1.4e-22 109.4 60 81.7
BcaC06g33802 Brassica carinata HOM05D001812 ORTHO05D001874 2.0e-21 105.5 60 78.3
A06p41060 Brassica napus HOM05D001812 ORTHO05D001874 5.9e-21 104.0 60 76.7
C07p36680 Brassica napus HOM05D001812 ORTHO05D001874 5.9e-21 104.0 60 76.7
BolC7t44185H Brassica oleracea HOM05D001812 ORTHO05D001874 5.9e-21 104.0 60 76.7
AT3G27570 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 1.0e-20 103.2 58 79.3
AL5G17000 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 1.3e-20 102.8 58 79.3
BraA06t27029Z Brassica rapa HOM05D001812 ORTHO05D001874 1.3e-20 102.8 60 76.7
Carub.0005s0600 Capsella rubella HOM05D001812 ORTHO05D001874 2.2e-20 102.1 60 75.0
BcaC03g17543 Brassica carinata HOM05D001812 ORTHO05D001874 5.0e-20 100.9 56 85.7
BcaC06g30976 Brassica carinata HOM05D001812 ORTHO05D001874 8.5e-20 100.1 60 73.3
BolC2t11500H Brassica oleracea HOM05D001812 ORTHO05D001874 8.5e-20 100.1 55 83.6
Sp2g16740 Schrenkiella parvula HOM05D001812 ORTHO05D001874 2.5e-19 98.6 60 73.3
Aa31LG2G5090 Aethionema arabicum HOM05D000146 ORTHO05D001874 1.6e-18 95.9 56 76.8
BcaB04g17144 Brassica carinata HOM05D001812 ORTHO05D001874 1.4e-17 92.8 59 79.7
Thhalv10004412m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 3.0e-17 91.7 55 76.4
CARHR148950 Cardamine hirsuta HOM05D001812 ORTHO05D001874 5.7e-16 87.4 61 65.6
Hma1.2p1_0999F.1_g246120 Hydrangea macrophylla HOM05D001812 ORTHO05D001874 9.1e-14 80.1 62 58.1
THA.LOC104805366 Tarenaya hassleriana HOM05D001812 ORTHO05D001874 2.0e-13 79.0 45 73.3
HanXRQChr09g0255221 Helianthus annuus HOM05D001812 ORTHO05D001874 4.5e-13 77.8 67 59.7
CSS0009181 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 1.7e-12 75.9 67 52.2
CiPaw.03G044200 Carya illinoinensis HOM05D001812 ORTHO05D001874 2.9e-12 75.1 60 60.0
Sabra16G0223600 Salix brachista HOM05D001812 ORTHO05D001874 2.9e-12 75.1 56 53.6
SGA_v2.0_scaffold47G17504 Striga asiatica HOM05D001812 ORTHO05D001874 5.0e-12 74.3 59 57.6
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 6.6e-12 73.9 34 91.2
Peaxi162Scf00129g01663 Petunia axillaris HOM05D001812 ORTHO05D001874 6.6e-12 73.9 59 52.5
Potri.001G344400 Populus trichocarpa HOM05D001812 ORTHO05D001874 1.1e-11 73.2 59 54.2
Lsat_1_v5_gn_4_184060 Lactuca sativa HOM05D001812 ORTHO05D001874 1.5e-11 72.8 67 56.7
RcHm_v2.0_Chr2g0173141 Rosa chinensis HOM05D001812 ORTHO05D001874 1.5e-11 72.8 59 54.2
Migut.K01398 Erythranthe guttata HOM05D001812 ORTHO05D001874 1.9e-11 72.4 57 59.6
Peaxi162Scf00080g01212 Petunia axillaris HOM05D001812 ORTHO05D001874 2.5e-11 72.0 59 52.5
Sopen02g037940 Solanum pennellii HOM05D001812 ORTHO05D001874 2.5e-11 72.0 65 50.8
Cpa.g.sc108.71 Carica papaya HOM05D001812 ORTHO05D001874 3.3e-11 71.6 55 60.0
Manes.15G151200 Manihot esculenta HOM05D001812 ORTHO05D001874 3.3e-11 71.6 56 57.1
CsaV3_5G027100 Cucumis sativus L. HOM05D001812 ORTHO05D001874 4.2e-11 71.2 59 50.8
CAN.G473.14 Capsicum annuum HOM05D001812 ORTHO05D001874 5.5e-11 70.9 62 51.6
SHI16367 Sapria himalayana HOM05D001812 ORTHO05D001874 5.5e-11 70.9 58 55.2
Sed0005436 Sechium edule HOM05D001812 ORTHO05D001874 5.5e-11 70.9 47 63.8
THA.LOC104823951 Tarenaya hassleriana HOM05D001812 ORTHO05D001874 5.5e-11 70.9 45 66.7
Solyc02g093370.2 Solanum lycopersicum HOM05D001812 ORTHO05D001874 9.5e-11 70.1 67 49.3
TWI12G1050 Tripterygium wilfordii HOM05D001812 ORTHO05D001874 9.5e-11 70.1 57 54.4
CiPaw.04G029000 Carya illinoinensis HOM05D001812 ORTHO05D001874 1.2e-10 69.7 81 45.7
QL02p074407 Quercus lobata HOM05D001812 ORTHO05D001874 1.2e-10 69.7 66 48.5
MD17G1026300 Malus domestica HOM05D001812 ORTHO05D001874 1.6e-10 69.3 59 52.5
MELO3C021584.2 Cucumis melo HOM05D001812 ORTHO05D001874 2.1e-10 68.9 58 48.3
Dinv33438 Davidia involucrata HOM05D001812 ORTHO05D001874 2.1e-10 68.9 53 50.9
PGSC0003DMG400012604 Solanum tuberosum HOM05D001812 ORTHO05D001874 2.1e-10 68.9 67 49.3
CARHR261470 Cardamine hirsuta HOM05D001812 ORTHO05D001874 2.8e-10 68.6 56 51.8
Ciclev10015497m.g Citrus clementina HOM05D001812 ORTHO05D001874 2.8e-10 68.6 56 53.6
Lju41C42T9 Lonicera japonica HOM05D001812 ORTHO05D001874 3.6e-10 68.2 65 49.2
Manes.17G111900 Manihot esculenta HOM05D001812 ORTHO05D001874 3.6e-10 68.2 57 47.4
Prupe.3G292400 Prunus persica HOM05D001812 ORTHO05D001874 3.6e-10 68.2 59 54.2
SGA_v2.0_scaffold30G12413 Striga asiatica HOM05D001812 ORTHO05D001874 3.6e-10 68.2 59 52.5
ClCG09G019290 Citrullus lanatus HOM05D001812 ORTHO05D001874 4.7e-10 67.8 59 50.8
Migut.L00807 Erythranthe guttata HOM05D001812 ORTHO05D001874 4.7e-10 67.8 54 53.7
MD09G1026600 Malus domestica HOM05D001812 ORTHO05D001874 4.7e-10 67.8 59 50.8
BraA04t17015Z Brassica rapa HOM05D001812 ORTHO05D001874 6.1e-10 67.4 56 51.8
FAN02G3695 Fragaria x ananassa HOM05D001812 ORTHO05D001874 6.1e-10 67.4 59 54.2
FAN05G0557 Fragaria x ananassa HOM05D001812 ORTHO05D001874 6.1e-10 67.4 59 54.2
BcaB06g27525 Brassica carinata HOM05D001812 ORTHO05D001874 8.0e-10 67.0 56 51.8
A04p13560 Brassica napus HOM05D001812 ORTHO05D001874 8.0e-10 67.0 56 51.8
C04p47340 Brassica napus HOM05D001812 ORTHO05D001874 8.0e-10 67.0 56 51.8
FAN14G4942 Fragaria x ananassa HOM05D001812 ORTHO05D001874 8.0e-10 67.0 59 54.2
Oeu048614.1 Olea europaea HOM05D001812 ORTHO05D001874 8.0e-10 67.0 48 56.2
Migut.L00900 Erythranthe guttata HOM05D001812 ORTHO05D001874 1.0e-09 66.6 54 53.7
Thhalv10027837m.g Eutrema salsugineum HOM05D001812 ORTHO05D001874 1.0e-09 66.6 56 51.8
FAN09G3298 Fragaria x ananassa HOM05D001812 ORTHO05D001874 1.0e-09 66.6 59 54.2
TWI36G0203 Tripterygium wilfordii HOM05D001812 ORTHO05D001874 1.0e-09 66.6 61 54.1
AT5G40510 Arabidopsis thaliana HOM05D001812 ORTHO05D001874 1.4e-09 66.2 56 51.8
Rhsim10G0015600 Rhododendron simsii HOM05D001812 ORTHO05D001874 1.4e-09 66.2 67 52.2
Sp7g01370 Schrenkiella parvula HOM05D001812 ORTHO05D001874 1.4e-09 66.2 56 51.8
AL7G49310 Arabidopsis lyrata HOM05D001812 ORTHO05D001874 1.8e-09 65.9 56 51.8
BolC4t26335H Brassica oleracea HOM05D001812 ORTHO05D001874 1.8e-09 65.9 56 50.0
Rhsim10G0016700 Rhododendron simsii HOM05D001812 ORTHO05D001874 1.8e-09 65.9 68 51.5
Carub.0007s3501 Capsella rubella HOM05D001812 ORTHO05D001874 2.3e-09 65.5 54 53.7
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 2.3e-09 65.5 67 52.2
Nitab4.5_0012657g0020 Nicotiana tabacum HOM05D001812 ORTHO05D001874 2.3e-09 65.5 50 56.0
Psat1g054240 Pisum sativum HOM05D001812 ORTHO05D001874 2.3e-09 65.5 53 56.6
PGR083G1439 Punica granatum HOM05D001812 ORTHO05D001874 2.3e-09 65.5 55 56.4
Aa31LG9G1100 Aethionema arabicum HOM05D001812 ORTHO05D001874 3.0e-09 65.1 56 51.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 3.0e-09 65.1 57 54.4
Migut.L00806 Erythranthe guttata HOM05D001812 ORTHO05D001874 3.0e-09 65.1 50 56.0
Eucgr.I01738 Eucalyptus grandis HOM05D001812 ORTHO05D001874 3.0e-09 65.1 64 46.9
Lsat_1_v5_gn_0_11741 Lactuca sativa HOM05D001812 ORTHO05D001874 3.0e-09 65.1 63 49.2
Aa31LG8G15520 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.0e-09 64.7 50 56.0
CSS0022403 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 4.0e-09 64.7 65 46.2
CSS0037148 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 4.0e-09 64.7 65 46.2
CsaV3_3G042850 Cucumis sativus L. HOM05D001812 ORTHO05D001874 4.0e-09 64.7 47 59.6
Medtr6g004780 Medicago truncatula HOM05D001812 ORTHO05D001874 4.0e-09 64.7 46 56.5
FvH4_6g51500 Fragaria vesca HOM05D001812 ORTHO05D001874 5.2e-09 64.3 59 50.8
Glyma.16G070400 Glycine max HOM05D001812 ORTHO05D001874 5.2e-09 64.3 54 50.0
Glyma.19G060200 Glycine max HOM05D001812 ORTHO05D001874 6.8e-09 63.9 47 55.3
Gohir.A05G355400 Gossypium hirsutum HOM05D001812 ORTHO05D001874 6.8e-09 63.9 55 60.0
Gohir.D04G057800 Gossypium hirsutum HOM05D001812 ORTHO05D001874 6.8e-09 63.9 55 60.0
Gorai.012G064500 Gossypium raimondii HOM05D001812 ORTHO05D001874 6.8e-09 63.9 55 60.0
MSTRG.15531 Avicennia marina HOM05D001812 ORTHO05D001874 8.9e-09 63.5 59 47.5
CSS0020999 Camellia sinensis var. sinensis HOM05D001812 ORTHO05D001874 8.9e-09 63.5 75 40.0
ECA232G2761 Erigeron canadensis HOM05D001812 ORTHO05D001874 8.9e-09 63.5 61 52.5
ECA240G2579 Erigeron canadensis HOM05D001812 ORTHO05D001874 8.9e-09 63.5 51 56.9
TPR.G33260 Trifolium pratense HOM05D001812 ORTHO05D001874 8.9e-09 63.5 52 55.8
COL.COLO4_29128 Corchorus olitorius HOM05D001812 ORTHO05D001874 1.2e-08 63.2 54 53.7
Atru.chr6.2404 Acer truncatum HOM05D001812 ORTHO05D001874 1.5e-08 62.8 54 48.1
ClCG10G013830 Citrullus lanatus HOM05D001812 ORTHO05D001874 1.5e-08 62.8 47 61.7
Glyma.19G003700 Glycine max HOM05D001812 ORTHO05D001874 2.0e-08 62.4 56 44.6
VMungo0464G1668 Vigna mungo HOM05D001812 ORTHO05D001874 2.0e-08 62.4 54 50.0
Nn3g16712 Nelumbo nucifera HOM05D001812 ORTHO05D001874 2.6e-08 62.0 43 58.1
Phvul.004G006500 Phaseolus vulgaris HOM05D001812 ORTHO05D001874 2.6e-08 62.0 47 53.2
PGSC0003DMG400006917 Solanum tuberosum HOM05D001812 ORTHO05D001874 2.6e-08 62.0 50 52.0
Thecc.04G018000 Theobroma cacao HOM05D001812 ORTHO05D001874 2.6e-08 62.0 49 59.2
CANSAT64G2159 Cannabis sativa HOM05D001812 ORTHO05D001874 3.4e-08 61.6 59 47.5
Lj2g0019160 Lotus japonicus HOM05D001812 ORTHO05D001874 3.4e-08 61.6 53 50.9
Lj1g0005994 Lotus japonicus HOM05D001812 ORTHO05D001874 4.4e-08 61.2 50 58.0
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 7.5e-08 60.5 42 66.7
SEGI_04030 Sequoiadendron giganteum HOM05D001812 ORTHO05D001874 7.5e-08 60.5 50 54.0
Solyc02g067840.3 Solanum lycopersicum HOM05D001812 ORTHO05D001874 7.5e-08 60.5 50 50.0
Sopen02g016950 Solanum pennellii HOM05D001812 ORTHO05D001874 7.5e-08 60.5 50 50.0
CDE09G0209 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 9.8e-08 60.1 56 57.1
HanXRQChr17g0548441 Helianthus annuus HOM05D001812 ORTHO05D001874 9.8e-08 60.1 52 50.0
Hund15526 Selenicereus undatus HOM05D001812 ORTHO05D001874 9.8e-08 60.1 49 51.0
CDE02G0249 Ceratophyllum demersum HOM05D001812 ORTHO05D001874 1.3e-07 59.7 56 57.1
Gohir.A09G029666 Gossypium hirsutum HOM05D001812 ORTHO05D001874 2.2e-07 58.9 51 51.0
Gohir.D09G029400 Gossypium hirsutum HOM05D001812 ORTHO05D001874 2.8e-07 58.5 51 51.0
Atru.chr2.3711_Atru.chr2.3712 Acer truncatum HOM05D001812 ORTHO05D001874 3.7e-07 58.2 43 58.1
ECA246G0626 Erigeron canadensis HOM05D001812 ORTHO05D001874 3.7e-07 58.2 55 43.6
Lalb_Chr22g0360751 Lupinus albus HOM05D001812 ORTHO05D001874 3.7e-07 58.2 50 52.0
Duzib147G0179 Durio zibethinus HOM05D001812 ORTHO05D001874 4.9e-07 57.8 57 47.4
Sc03g0007340 Simmondsia chinensis HOM05D001812 ORTHO05D001874 4.9e-07 57.8 54 44.4
HanXRQChr09g0266941 Helianthus annuus HOM05D001812 ORTHO05D001874 6.3e-07 57.4 52 48.1
Lalb_Chr14g0362831 Lupinus albus HOM05D001812 ORTHO05D001874 6.3e-07 57.4 58 44.8
SEGI_16317 Sequoiadendron giganteum HOM05D008257 ORTHO05D010546 6.3e-07 57.4 50 52.0
SEGI_32014 Sequoiadendron giganteum HOM05D008257 ORTHO05D010546 6.3e-07 57.4 50 52.0
Psat0s1567g0160 Pisum sativum HOM05D001812 ORTHO05D001874 8.3e-07 57.0 46 58.7
AagrBONN_evm.TU.Sc2ySwM_362.2424 Anthoceros agrestis HOM05D001812 ORTHO05D001874 1.1e-06 56.6 56 48.2
AUR62028469 Chenopodium quinoa HOM05D001812 ORTHO05D001874 1.1e-06 56.6 42 59.5
MD09G1024400 Malus domestica HOM05D001812 ORTHO05D001874 1.1e-06 56.6 57 45.6
Aqoxy5G03766 Aquilegia oxysepala HOM05D001812 ORTHO05D001874 1.4e-06 56.2 66 39.4
Cc07_g01620 Coffea canephora HOM05D001812 ORTHO05D001874 1.4e-06 56.2 36 61.1
Gorai.006G034300 Gossypium raimondii HOM05D001812 ORTHO05D001874 1.8e-06 55.8 49 51.0
Medtr7g033625 Medicago truncatula HOM05D001812 ORTHO05D001874 1.8e-06 55.8 41 58.5
EL10Ac6g14088 Beta vulgaris HOM05D001812 ORTHO05D001874 2.4e-06 55.5 49 49.0
Medtr6g004740 Medicago truncatula HOM05D001812 ORTHO05D001874 3.1e-06 55.1 42 59.5
arahy.Tifrunner.gnm1.ann1.6NTG45 Arachis hypogaea HOM05D001812 ORTHO05D001874 4.1e-06 54.7 46 47.8
arahy.Tifrunner.gnm1.ann1.L3XFCU Arachis hypogaea HOM05D001812 ORTHO05D001874 4.1e-06 54.7 46 47.8
Haze_09843 Corylus avellana HOM05D001812 ORTHO05D001874 4.1e-06 54.7 56 39.3
GSVIVG01032398001 Vitis vinifera HOM05D001812 ORTHO05D001874 4.1e-06 54.7 36 61.1
Cpa.g.sc12.123 Carica papaya HOM05D001812 ORTHO05D001874 5.4e-06 54.3 46 50.0
Migut.M01640 Erythranthe guttata HOM05D001812 ORTHO05D001874 7.0e-06 53.9 49 46.9
Oeu054440.1 Olea europaea HOM05D001812 ORTHO05D001874 9.2e-06 53.5 47 46.8
TWI38G0291 Tripterygium wilfordii HOM05D001812 ORTHO05D001874 9.2e-06 53.5 47 48.9


User provided reference genes

Program Settings