Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.6e-135 485.3 325 100.0
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-122 443.0 319 93.7
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 8.5e-121 437.6 322 92.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.5e-120 436.8 322 92.2
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-120 435.6 322 92.5
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.0e-118 430.6 329 90.6
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-118 429.9 322 91.9
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-118 429.9 322 91.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.2e-116 422.9 322 90.4
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.9e-113 412.5 322 89.1
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.2e-111 407.1 322 89.1
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 2.0e-109 399.8 319 88.7
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.6e-109 399.4 322 86.6
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-107 394.0 319 87.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.1e-107 394.0 319 87.5
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.7e-105 386.7 322 86.3
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 6.1e-103 378.3 296 89.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 5.7e-101 371.7 322 79.2
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-96 356.7 235 92.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 2.6e-93 346.3 318 70.1
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.2e-92 343.2 321 76.9
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 6.4e-92 341.7 328 74.4
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 7.0e-91 338.2 319 74.6
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 9.2e-91 337.8 314 73.2
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.6e-90 337.0 319 68.3
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.0e-90 336.7 324 77.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.0e-89 334.3 318 74.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.5e-88 330.5 319 77.1
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 4.3e-88 328.9 321 73.5
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 7.3e-88 328.2 318 72.3
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.1e-86 324.3 327 63.9
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.0e-86 322.4 303 77.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 8.9e-86 321.2 322 67.7
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-85 319.7 216 85.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.6e-85 319.7 327 73.7
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.4e-85 318.9 316 75.6
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.4e-85 318.9 316 75.6
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 9.8e-85 317.8 323 74.6
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 2.9e-84 316.2 328 70.7
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.4e-84 315.1 323 74.3
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.4e-83 313.9 320 72.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 3.2e-83 312.8 318 70.8
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.2e-83 312.8 319 74.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 5.4e-83 312.0 335 71.6
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.2e-82 310.8 324 65.1
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.2e-82 310.8 322 65.2
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.6e-82 308.9 335 70.4
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.3e-81 307.4 319 71.8
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 3.0e-81 306.2 323 71.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 5.1e-81 305.4 323 64.7
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 5.1e-81 305.4 318 64.2
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 6.6e-81 305.1 320 64.4
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.3e-80 302.8 315 65.7
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.3e-80 302.8 315 65.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 4.3e-80 302.4 320 72.2
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.3e-80 302.4 335 69.6
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 4.3e-80 302.4 311 74.9
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 1.6e-79 300.4 325 63.1
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 2.1e-79 300.1 310 66.5
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.8e-79 299.7 311 72.3
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-78 297.4 174 89.1
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.4e-78 297.4 314 72.3
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-78 297.0 174 89.1
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.8e-78 297.0 319 71.8
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 8.9e-78 294.7 327 65.4
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.9e-78 294.7 335 64.2
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.2e-77 294.3 327 66.7
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.2e-77 294.3 335 65.7
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.2e-77 294.3 325 65.2
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 9.9e-77 291.2 319 62.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.3e-76 290.8 325 69.8
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.7e-76 290.4 318 63.2
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.9e-76 289.7 322 62.7
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 4.9e-76 288.9 316 70.6
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 4.9e-76 288.9 291 75.3
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 6.4e-76 288.5 316 62.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 8.4e-76 288.1 317 62.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-75 287.7 318 61.6
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-75 287.7 318 61.6
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.4e-75 287.3 316 70.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 2.4e-75 286.6 311 67.2
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.4e-75 286.6 317 62.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 3.2e-75 286.2 322 63.7
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.1e-75 285.8 313 71.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 4.1e-75 285.8 324 68.5
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.2e-75 284.6 216 76.4
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 9.2e-75 284.6 323 68.1
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.2e-74 284.3 317 69.1
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.2e-74 284.3 323 70.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.1e-74 283.5 324 67.6
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.5e-74 282.7 319 68.7
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.5e-74 282.7 319 68.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 6.0e-74 282.0 318 69.5
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.3e-73 280.0 310 71.3
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 2.3e-73 280.0 326 61.7
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 3.0e-73 279.6 344 58.4
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 5.1e-73 278.9 322 68.9
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 6.6e-73 278.5 324 61.1
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.1e-72 277.7 346 52.0
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.5e-72 277.3 300 73.7
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.3e-72 275.8 335 61.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-72 274.6 323 61.9
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.8e-71 273.1 301 71.8
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 4.7e-71 272.3 216 82.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.1e-70 271.2 293 74.7
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.4e-70 270.8 318 62.6
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.4e-70 270.8 296 74.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 5.2e-70 268.9 296 70.9
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 8.9e-70 268.1 322 65.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 8.9e-70 268.1 291 75.3
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-69 267.3 174 83.9
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-68 264.2 174 82.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-68 264.2 333 65.5
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.3e-68 264.2 313 60.7
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-67 260.0 174 81.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 2.1e-66 256.9 310 65.5
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.0e-65 254.6 287 71.4
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 5.1e-65 252.3 153 88.9
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 5.1e-65 252.3 318 60.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 1.9e-64 250.4 315 65.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 6.2e-63 245.4 229 87.3
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-62 244.6 185 81.1
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.8e-62 243.8 230 62.2
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-62 243.4 149 88.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 2.0e-61 240.4 293 64.2
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 6.4e-60 235.3 325 55.4
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.9e-59 233.8 324 60.8
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 3.2e-59 233.0 319 60.2
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-58 230.3 216 69.4
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.1e-58 230.3 174 73.6
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-58 229.6 184 84.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 6.7e-57 225.3 296 66.2
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 2.2e-52 210.3 151 82.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-49 200.7 113 93.8
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 3.9e-49 199.5 308 50.0
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 2.5e-48 196.8 316 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 9.6e-48 194.9 315 50.5
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 7.1e-43 178.7 308 47.1
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.5e-40 171.0 155 60.0
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 4.3e-40 169.5 162 58.6
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.6e-39 167.5 119 73.9
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.7e-39 166.4 313 51.1
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 8.2e-39 165.2 156 63.5
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.0e-36 156.0 212 70.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.1e-35 154.8 158 56.3
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 3.9e-33 146.4 150 60.7
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.7e-31 139.8 207 63.3
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 9.1e-30 135.2 153 54.9
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.2e-29 134.8 161 56.5
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-27 128.3 181 68.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-23 113.6 96 64.6
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-22 111.7 96 63.5
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-22 111.7 96 63.5
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.9e-20 103.6 96 60.4
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-20 103.6 89 64.0
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.9e-19 100.9 144 43.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-18 97.1 102 56.9
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-17 95.1 56 82.1
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.9e-17 93.2 77 64.9
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.3e-16 90.1 96 52.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.8e-14 84.3 67 68.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 4.1e-14 83.2 67 68.7
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 2.6e-13 80.5 165 37.0
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.8e-12 76.6 158 48.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.6e-10 70.1 61 62.3
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 6.1e-10 69.3 38 84.2
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-09 68.2 62 61.3
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 3.0e-09 67.0 47 70.2


User provided reference genes

Program Settings