Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23403 Brassica carinata HOM05D001216 ORTHO05D027542 1.3e-73 279.6 137 100.0
BcaB06g25408 Brassica carinata HOM05D001216 ORTHO05D003822 3.8e-62 241.5 136 92.6
A05p35390 Brassica napus HOM05D001216 ORTHO05D003822 5.5e-45 184.5 137 74.5
BraA05t22349Z Brassica rapa HOM05D001216 ORTHO05D003822 5.5e-45 184.5 137 74.5
BcaC05g29127 Brassica carinata HOM05D001216 ORTHO05D003822 3.7e-41 171.8 147 68.7
C05p53580 Brassica napus HOM05D001216 ORTHO05D003822 3.7e-41 171.8 147 68.7
BolC5t34035H Brassica oleracea HOM05D001216 ORTHO05D003822 3.7e-41 171.8 147 68.7
Thhalv10020161m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 9.1e-40 167.2 164 65.2
Sp3g12290 Schrenkiella parvula HOM05D001216 ORTHO05D003822 1.2e-39 166.8 164 65.2
CARHR088880 Cardamine hirsuta HOM05D001216 ORTHO05D003822 2.2e-33 146.0 163 58.9
Carub.0003s1364 Capsella rubella HOM05D001216 ORTHO05D003822 4.8e-33 144.8 159 56.0
AT3G14050 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 1.5e-31 139.8 161 54.7
AL3G26250 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 4.5e-31 138.3 163 58.3
Aa31LG8G1240 Aethionema arabicum HOM05D001216 ORTHO05D003822 2.2e-30 136.0 165 55.2
THA.LOC104810369 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 4.4e-26 121.7 173 49.7
THA.LOC104815622 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 1.3e-25 120.2 176 48.3
BcaB07g33262 Brassica carinata HOM05D001216 ORTHO05D003822 8.5e-22 107.5 156 46.2
Thhalv10011285m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 2.1e-20 102.8 166 46.4
Aa31LG10G1280 Aethionema arabicum HOM05D001216 ORTHO05D003822 2.7e-20 102.4 163 46.0
C06p15660 Brassica napus HOM05D001216 ORTHO05D003822 1.4e-19 100.1 153 45.8
BolC6t36753H Brassica oleracea HOM05D001216 ORTHO05D003822 1.4e-19 100.1 150 46.7
BcaC08g43593 Brassica carinata HOM05D001216 ORTHO05D003822 4.0e-19 98.6 151 46.4
C06p09910 Brassica napus HOM05D001216 ORTHO05D003822 4.0e-19 98.6 151 46.4
BolC6t36063H Brassica oleracea HOM05D001216 ORTHO05D003822 4.0e-19 98.6 151 46.4
Sp1g40580 Schrenkiella parvula HOM05D001216 ORTHO05D003822 4.0e-19 98.6 168 44.6
Carub.0001s4337 Capsella rubella HOM05D001216 ORTHO05D003822 2.0e-18 96.3 164 43.9
BcaC08g44164 Brassica carinata HOM05D001216 ORTHO05D003822 2.6e-18 95.9 156 44.9
AL1G62850 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 9.7e-18 94.0 163 44.2
CARHR044480 Cardamine hirsuta HOM05D001216 ORTHO05D003822 1.3e-17 93.6 161 42.9
BcaB02g10860 Brassica carinata HOM05D001216 ORTHO05D003822 6.3e-17 91.3 151 46.4
AT1G54130 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 8.3e-17 90.9 162 42.0
Thecc.06G121200 Theobroma cacao HOM05D001216 ORTHO05D003822 8.3e-17 90.9 163 42.9
Potri.003G066000 Populus trichocarpa HOM05D001216 ORTHO05D003822 1.1e-16 90.5 166 43.4
BraA06t23267Z Brassica rapa HOM05D001216 ORTHO05D003822 1.4e-16 90.1 148 43.9
Gohir.A10G053700 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.4e-16 90.1 166 43.4
Gohir.D05G142300 Gossypium hirsutum HOM05D001216 ORTHO05D003822 2.4e-16 89.4 155 43.9
Gorai.009G146300 Gossypium raimondii HOM05D001216 ORTHO05D003822 2.4e-16 89.4 155 43.9
Gohir.A05G140000 Gossypium hirsutum HOM05D001216 ORTHO05D003822 3.1e-16 89.0 156 45.5
Sabra03G0038600 Salix brachista HOM05D001216 ORTHO05D003822 3.1e-16 89.0 166 43.4
COL.COLO4_30748 Corchorus olitorius HOM05D001216 ORTHO05D003822 4.1e-16 88.6 163 41.1
Glyma.16G008400 Glycine max HOM05D001216 ORTHO05D003822 4.1e-16 88.6 157 43.9
Gorai.011G059200 Gossypium raimondii HOM05D001216 ORTHO05D003822 5.3e-16 88.2 166 42.2
A06p00530 Brassica napus HOM05D001216 ORTHO05D003822 7.0e-16 87.8 148 43.2
Gohir.D10G055500 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.6e-15 86.7 166 41.6
Manes.04G145500 Manihot esculenta HOM05D001216 ORTHO05D003822 1.6e-15 86.7 164 45.1
Glyma.07G039600 Glycine max HOM05D001216 ORTHO05D003822 2.0e-15 86.3 155 42.6
Manes.11G019500 Manihot esculenta HOM05D001216 ORTHO05D003822 2.0e-15 86.3 165 43.6
PGR102G0760 Punica granatum HOM05D001216 ORTHO05D003822 2.7e-15 85.9 159 43.4
DCAR_016123 Daucus carota HOM05D001216 ORTHO05D003822 4.5e-15 85.1 117 49.6
Phvul.010G129100 Phaseolus vulgaris HOM05D001216 ORTHO05D003822 5.9e-15 84.7 153 43.1
Potri.001G168200 Populus trichocarpa HOM05D001216 ORTHO05D003822 7.7e-15 84.3 163 42.9
Eucgr.J02809 Eucalyptus grandis HOM05D001216 ORTHO05D003822 2.2e-14 82.8 176 39.2
VMungo0331G0428 Vigna mungo HOM05D001216 ORTHO05D003822 2.9e-14 82.4 155 42.6
arahy.Tifrunner.gnm1.ann1.SCHH8V Arachis hypogaea HOM05D001216 ORTHO05D003822 5.0e-14 81.6 166 41.6
arahy.Tifrunner.gnm1.ann1.SZLU9V Arachis hypogaea HOM05D001216 ORTHO05D003822 5.0e-14 81.6 166 41.6
Cpa.g.sc589.3 Carica papaya HOM05D001216 ORTHO05D003822 5.0e-14 81.6 176 38.6
Hma1.2p1_0686F.1_g203400 Hydrangea macrophylla HOM05D001216 ORTHO05D003822 5.0e-14 81.6 152 42.8
Haze_16037 Corylus avellana HOM05D001216 ORTHO05D003822 8.5e-14 80.9 154 42.2
Cfa003528 Carpinus fangiana HOM05D001216 ORTHO05D003822 2.5e-13 79.3 154 42.9
QL05p004201 Quercus lobata HOM05D001216 ORTHO05D003822 2.5e-13 79.3 152 42.8
Atru.chr1.3998 Acer truncatum HOM05D001216 ORTHO05D003822 3.2e-13 79.0 160 43.1
Duzib160G0167 Durio zibethinus HOM05D001216 ORTHO05D003822 3.2e-13 79.0 156 41.0
Dinv37864 Davidia involucrata HOM05D001216 ORTHO05D003822 4.2e-13 78.6 172 40.7
Sabra01G0142400 Salix brachista HOM05D001216 ORTHO05D003822 4.2e-13 78.6 163 41.1
Actinidia26025 Actinidia chinensis HOM05D001216 ORTHO05D003822 5.5e-13 78.2 153 39.9
Prupe.3G039700 Prunus persica HOM05D001216 ORTHO05D003822 7.2e-13 77.8 173 42.2
Ciclev10024989m.g Citrus clementina HOM05D001216 ORTHO05D003822 9.4e-13 77.4 164 37.8
Cc04_g01270 Coffea canephora HOM05D001216 ORTHO05D003822 9.4e-13 77.4 168 41.1
Lj3g0021321 Lotus japonicus HOM05D001216 ORTHO05D003822 9.4e-13 77.4 160 38.1
CsaV3_3G031310 Cucumis sativus L. HOM05D001216 ORTHO05D003822 6.1e-12 74.7 169 38.5
CsaV3_UNG227950 Cucumis sativus L. HOM05D001216 ORTHO05D003822 6.1e-12 74.7 169 38.5
vmacro15040 Vaccinium macrocarpon HOM05D001216 ORTHO05D003822 8.0e-12 74.3 147 39.5
TAR383G0104 Trochodendron aralioides HOM05D001216 ORTHO05D003822 1.0e-11 73.9 171 40.4
Dinv20429 Davidia involucrata HOM05D001216 ORTHO05D003822 1.4e-11 73.6 171 38.6
Peaxi162Scf00038g02114 Petunia axillaris HOM05D001216 ORTHO05D003822 1.8e-11 73.2 153 42.5
SalBow6G2735 Salvia bowleyana HOM05D001216 ORTHO05D003822 1.8e-11 73.2 152 40.8
SalBow6G3972 Salvia bowleyana HOM05D001216 ORTHO05D003822 1.8e-11 73.2 152 40.8
ClCG07G014120 Citrullus lanatus HOM05D001216 ORTHO05D003822 2.3e-11 72.8 168 38.1
CiPaw.02G135500 Carya illinoinensis HOM05D001216 ORTHO05D003822 4.0e-11 72.0 154 41.6
Eucgr.F04408 Eucalyptus grandis HOM05D001216 ORTHO05D003822 4.0e-11 72.0 158 36.1
Nn8g38635 Nelumbo nucifera HOM05D001216 ORTHO05D003822 4.0e-11 72.0 166 39.2
MD09G1181600 Malus domestica HOM05D001216 ORTHO05D003822 6.8e-11 71.2 177 40.1
Lalb_Chr04g0263551 Lupinus albus HOM05D001216 ORTHO05D003822 1.2e-10 70.5 157 39.5
ECA247G4000 Erigeron canadensis HOM05D001216 ORTHO05D003822 2.0e-10 69.7 131 43.5
Lalb_Chr25g0281501 Lupinus albus HOM05D001216 ORTHO05D003822 2.0e-10 69.7 163 35.6
ATR0598G350 Amborella trichopoda HOM05D001216 ORTHO05D003822 2.6e-10 69.3 159 42.8
SGA_v2.0_scaffold122G33340 Striga asiatica HOM05D001216 ORTHO05D003822 2.6e-10 69.3 157 39.5
SalBow7G2863 Salvia bowleyana HOM05D001216 ORTHO05D003822 3.4e-10 68.9 153 37.3
CiPaw.01G218200 Carya illinoinensis HOM05D001216 ORTHO05D003822 4.4e-10 68.6 154 39.6
Migut.I01081 Erythranthe guttata HOM05D001216 ORTHO05D003822 4.4e-10 68.6 159 37.7
BcaB02g10633 Brassica carinata HOM05D001216 ORTHO05D000293 5.7e-10 68.2 72 61.1
Migut.D00935 Erythranthe guttata HOM05D001216 ORTHO05D003822 7.5e-10 67.8 159 37.7
Solyc03g123370.3 Solanum lycopersicum HOM05D001216 ORTHO05D003822 7.5e-10 67.8 159 39.6
VMungo1309G2120 Vigna mungo HOM05D001216 ORTHO05D027542 7.5e-10 67.8 107 43.9
CSS0035701 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D003822 1.3e-09 67.0 173 38.7
Oeu000414.1 Olea europaea HOM05D001216 ORTHO05D003822 1.3e-09 67.0 164 37.8
Sopen03g041150 Solanum pennellii HOM05D001216 ORTHO05D003822 1.3e-09 67.0 159 39.0
Oeu026246.1 Olea europaea HOM05D001216 ORTHO05D003822 2.2e-09 66.2 126 42.1
TWI31G1175 Tripterygium wilfordii HOM05D001216 ORTHO05D003822 2.2e-09 66.2 154 37.7
MSTRG.10950 Avicennia marina HOM05D001216 ORTHO05D003822 3.7e-09 65.5 153 39.2
PGSC0003DMG400014030 Solanum tuberosum HOM05D001216 ORTHO05D003822 3.7e-09 65.5 159 38.4
MD17G1168000 Malus domestica HOM05D001216 ORTHO05D003822 6.3e-09 64.7 160 38.1
Aqoxy7G04059 Aquilegia oxysepala HOM05D001216 ORTHO05D003822 1.1e-08 63.9 173 38.7
RcHm_v2.0_Chr2g0145751 Rosa chinensis HOM05D001216 ORTHO05D003822 1.1e-08 63.9 138 42.0
MSTRG.22546 Avicennia marina HOM05D001216 ORTHO05D003822 1.4e-08 63.5 162 37.0
Ca_23389_v3 Cicer arietinum L. HOM05D001216 ORTHO05D003822 1.4e-08 63.5 150 42.7
FAN02G1741 Fragaria x ananassa HOM05D001216 ORTHO05D003822 1.4e-08 63.5 146 41.1
HanXRQChr09g0276921 Helianthus annuus HOM05D001216 ORTHO05D003822 1.8e-08 63.2 134 38.1
Sed0005494 Sechium edule HOM05D001216 ORTHO05D003822 1.8e-08 63.2 140 38.6
FAN05G2062 Fragaria x ananassa HOM05D001216 ORTHO05D003822 3.1e-08 62.4 143 41.3
CANSAT13G0001 Cannabis sativa HOM05D001216 ORTHO05D003822 5.4e-08 61.6 167 35.9
CANSAT56G1565 Cannabis sativa HOM05D001216 ORTHO05D003822 5.4e-08 61.6 167 35.9
HanXRQChr04g0094711 Helianthus annuus HOM05D001216 ORTHO05D003822 7.0e-08 61.2 72 52.8
SGA_v2.0_scaffold71G23848 Striga asiatica HOM05D001216 ORTHO05D003822 7.0e-08 61.2 163 36.8
CSS0007713 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D003822 1.2e-07 60.5 139 41.0
CAN.G668.43 Capsicum annuum HOM05D001216 ORTHO05D003822 1.2e-07 60.5 161 39.1
Rhsim08G0239700 Rhododendron simsii HOM05D001216 ORTHO05D003822 1.6e-07 60.1 163 32.5
FAN09G3390 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.0e-07 59.7 143 39.9
Lsat_1_v5_gn_1_38241 Lactuca sativa HOM05D001216 ORTHO05D003822 2.7e-07 59.3 146 37.0
HPP92_016606 Vanilla planifolia HOM05D001216 ORTHO05D003822 2.7e-07 59.3 159 34.0
FAN14G5102 Fragaria x ananassa HOM05D001216 ORTHO05D003822 3.5e-07 58.9 143 40.6
MSTRG.9522 Avicennia marina HOM05D001216 ORTHO05D003822 5.9e-07 58.2 151 38.4
FvH4_6g34880 Fragaria vesca HOM05D001216 ORTHO05D003822 5.9e-07 58.2 142 40.8
Lsat_1_v5_gn_4_93201 Lactuca sativa HOM05D001216 ORTHO05D003822 5.9e-07 58.2 94 44.7
Lj9A524T49 Lonicera japonica HOM05D001216 ORTHO05D003822 1.0e-06 57.4 171 38.0
MBI13_g12061_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D003822 1.0e-06 57.4 137 35.0
MELO3C025801.2 Cucumis melo HOM05D001216 ORTHO05D003822 1.7e-06 56.6 107 40.2
Nitab4.5_0004422g0050 Nicotiana tabacum HOM05D001216 ORTHO05D003822 2.3e-06 56.2 158 38.0
Nitab4.5_0007255g0010 Nicotiana tabacum HOM05D001216 ORTHO05D003822 3.8e-06 55.5 159 37.7
QL05p004175 Quercus lobata HOM05D001216 ORTHO05D027542 3.8e-06 55.5 99 41.4
Lj5A36T82 Lonicera japonica HOM05D001216 ORTHO05D003822 5.0e-06 55.1 161 35.4
PGR119G1618 Punica granatum HOM05D001216 ORTHO05D003822 5.0e-06 55.1 143 37.8


User provided reference genes

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