Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23399 Brassica carinata HOM05D000363 ORTHO05D000236 4.3e-32 140.6 65 100.0
BcaC07g39578 Brassica carinata HOM05D000363 ORTHO05D000236 1.1e-11 72.8 51 70.6
BcaNung00404 Brassica carinata HOM05D000363 ORTHO05D000236 1.1e-11 72.8 51 70.6
BolC8t50248H Brassica oleracea HOM05D000363 ORTHO05D000236 1.1e-11 72.8 51 70.6
CARHR160570 Cardamine hirsuta HOM05D000363 ORTHO05D000236 1.1e-11 72.8 51 70.6
BcaC09g50060 Brassica carinata HOM05D000363 ORTHO05D005000 2.5e-11 71.6 51 68.6
A01p23700 Brassica napus HOM05D000363 ORTHO05D000236 2.5e-11 71.6 51 68.6
C01p29480 Brassica napus HOM05D000363 ORTHO05D005000 2.5e-11 71.6 51 68.6
BolC1t02888H Brassica oleracea HOM05D000363 ORTHO05D000236 2.5e-11 71.6 51 68.6
BraA01t02281Z Brassica rapa HOM05D000363 ORTHO05D000236 2.5e-11 71.6 51 68.6
Sp5g11210 Schrenkiella parvula HOM05D000363 ORTHO05D000236 2.5e-11 71.6 51 68.6
C08p26300 Brassica napus HOM05D000363 ORTHO05D000236 3.2e-11 71.2 50 70.0
BraA09t39869Z Brassica rapa HOM05D000363 ORTHO05D000236 3.2e-11 71.2 51 68.6
Thhalv10010546m.g Eutrema salsugineum HOM05D000363 ORTHO05D000236 1.6e-10 68.9 51 66.7
BcaB01g00555 Brassica carinata HOM05D000363 ORTHO05D000236 2.1e-10 68.6 51 64.7
AL5G31420 Arabidopsis lyrata HOM05D000363 ORTHO05D000236 3.5e-10 67.8 51 68.6
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 3.5e-10 67.8 39 82.1
AT3G51000 Arabidopsis thaliana HOM05D000363 ORTHO05D000236 1.0e-09 66.2 51 66.7
Carub.0005s1740 Capsella rubella HOM05D000363 ORTHO05D000236 1.0e-09 66.2 51 64.7
BcaC06g33064 Brassica carinata HOM05D000363 ORTHO05D000236 1.1e-08 62.8 51 62.7
Aa31LG4G19120 Aethionema arabicum HOM05D000363 ORTHO05D000236 2.5e-08 61.6 51 58.8
COL.COLO4_21996 Corchorus olitorius HOM05D000363 ORTHO05D000236 4.3e-08 60.8 51 54.9
Haze_03840 Corylus avellana HOM05D000363 ORTHO05D000236 4.3e-08 60.8 41 68.3
Cfa006915 Carpinus fangiana HOM05D000363 ORTHO05D000236 7.4e-08 60.1 41 68.3
Sabra07G0015900 Salix brachista HOM05D000363 ORTHO05D000236 9.7e-08 59.7 41 65.9
Sabra07G0016000 Salix brachista HOM05D000363 ORTHO05D000236 9.7e-08 59.7 41 65.9
Sabra07G0016100 Salix brachista HOM05D000363 ORTHO05D000236 9.7e-08 59.7 41 65.9
Manes.02G098700 Manihot esculenta HOM05D000363 ORTHO05D000236 1.6e-07 58.9 41 63.4
Duzib147G1666 Durio zibethinus HOM05D000363 ORTHO05D000236 2.2e-07 58.5 41 68.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 3.7e-07 57.8 39 71.8
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 3.7e-07 57.8 39 71.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.7e-07 57.8 39 71.8
CiPaw.07G053100 Carya illinoinensis HOM05D000363 ORTHO05D000236 3.7e-07 57.8 41 65.9
CiPaw.08G137800 Carya illinoinensis HOM05D000363 ORTHO05D000236 3.7e-07 57.8 51 56.9
Gohir.D11G187600 Gossypium hirsutum HOM05D000363 ORTHO05D000236 4.8e-07 57.4 41 65.9
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 4.8e-07 57.4 41 65.9
Gohir.A11G181100 Gossypium hirsutum HOM05D000363 ORTHO05D000236 6.3e-07 57.0 41 65.9
Thecc.01G026800 Theobroma cacao HOM05D000363 ORTHO05D000236 6.3e-07 57.0 41 65.9
EL10As8g23883 Beta vulgaris HOM05D000363 ORTHO05D000236 8.2e-07 56.6 41 63.4
Sabra07G0016200 Salix brachista HOM05D000363 ORTHO05D000236 8.2e-07 56.6 41 63.4
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.1e-06 56.2 39 69.2
Gohir.A11G181000 Gossypium hirsutum HOM05D000363 ORTHO05D000236 1.1e-06 56.2 51 54.9
Gohir.D11G187500 Gossypium hirsutum HOM05D000363 ORTHO05D000236 1.1e-06 56.2 51 54.9
Gorai.007G199400 Gossypium raimondii HOM05D000363 ORTHO05D000236 1.1e-06 56.2 51 54.9
Ah.03g141260 Amaranthus hybridus HOM05D000363 ORTHO05D000236 1.4e-06 55.8 41 63.4
Ciclev10028838m.g Citrus clementina HOM05D000363 ORTHO05D000236 1.4e-06 55.8 50 56.0
Glyma.02G052300 Glycine max HOM05D000363 ORTHO05D000236 1.8e-06 55.5 41 63.4
HanXRQChr16g0530741 Helianthus annuus HOM05D000363 ORTHO05D000236 1.8e-06 55.5 40 65.0
AUR62007624 Chenopodium quinoa HOM05D000363 ORTHO05D000236 2.4e-06 55.1 40 62.5
QL06p034881 Quercus lobata HOM05D000363 ORTHO05D000236 2.4e-06 55.1 41 63.4
QL10p007455 Quercus lobata HOM05D000363 ORTHO05D000236 2.4e-06 55.1 41 63.4
AUR62004110 Chenopodium quinoa HOM05D000363 ORTHO05D000236 3.1e-06 54.7 40 62.5
QL06p034884 Quercus lobata HOM05D000363 ORTHO05D000236 3.1e-06 54.7 41 63.4
QL10p007459 Quercus lobata HOM05D000363 ORTHO05D000236 3.1e-06 54.7 41 63.4
TWI09G1189 Tripterygium wilfordii HOM05D000363 ORTHO05D000236 3.1e-06 54.7 50 54.0
A09p01810 Brassica napus HOM05D000363 ORTHO05D000236 4.1e-06 54.3 55 49.1
BraA09t35835Z Brassica rapa HOM05D000363 ORTHO05D000236 4.1e-06 54.3 55 49.1
Glyma.16G132500 Glycine max HOM05D000363 ORTHO05D000236 5.3e-06 53.9 39 64.1
Atru.chr3.732 Acer truncatum HOM05D000363 ORTHO05D000236 6.9e-06 53.5 41 61.0
Actinidia19222 Actinidia chinensis HOM05D000363 ORTHO05D000236 6.9e-06 53.5 40 62.5
CANSAT01G2185 Cannabis sativa HOM05D000363 ORTHO05D000236 6.9e-06 53.5 41 61.0
Dinv05201 Davidia involucrata HOM05D000363 ORTHO05D000236 6.9e-06 53.5 40 62.5
Sc16g0002440 Simmondsia chinensis HOM05D000363 ORTHO05D000236 6.9e-06 53.5 41 61.0
Aa31LG5G1980 Aethionema arabicum HOM05D000363 ORTHO05D000236 9.0e-06 53.1 55 45.5
ECA246G4788 Erigeron canadensis HOM05D000363 ORTHO05D000236 9.0e-06 53.1 40 57.5
MD02G1138300 Malus domestica HOM05D000363 ORTHO05D000236 9.0e-06 53.1 41 56.1
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 9.0e-06 53.1 41 61.0
RcHm_v2.0_Chr2g0100331 Rosa chinensis HOM05D000363 ORTHO05D000236 9.0e-06 53.1 41 61.0


User provided reference genes

Program Settings