Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23398 Brassica carinata HOM05D000528 ORTHO05D090816 1.9e-43 178.7 86 100.0
Thhalv10012445m.g Eutrema salsugineum HOM05D000528 ORTHO05D001569 2.2e-23 112.1 77 75.3
Sp6g24780 Schrenkiella parvula HOM05D000528 ORTHO05D001569 2.2e-23 112.1 77 75.3
BcaC04g24224 Brassica carinata HOM05D000528 ORTHO05D001569 4.8e-23 110.9 77 74.0
A10p20100 Brassica napus HOM05D000528 ORTHO05D001569 4.8e-23 110.9 77 74.0
C09p56570 Brassica napus HOM05D000528 ORTHO05D001569 4.8e-23 110.9 77 74.0
BolC9t58522H Brassica oleracea HOM05D000528 ORTHO05D001569 4.8e-23 110.9 77 74.0
BraA10t44084Z Brassica rapa HOM05D000528 ORTHO05D001569 4.8e-23 110.9 77 74.0
AL6G31120 Arabidopsis lyrata HOM05D000528 ORTHO05D001569 1.2e-21 106.3 75 73.3
CARHR064710 Cardamine hirsuta HOM05D000528 ORTHO05D001569 1.2e-21 106.3 78 73.1
Carub.0006s1796 Capsella rubella HOM05D000528 ORTHO05D001569 2.7e-21 105.1 74 73.0
AT5G19610 Arabidopsis thaliana HOM05D000528 ORTHO05D001569 7.7e-21 103.6 74 71.6
Aa31LG1G8700 Aethionema arabicum HOM05D000528 ORTHO05D001569 1.0e-20 103.2 76 68.4
THA.LOC104799071 Tarenaya hassleriana HOM05D000528 ORTHO05D001569 1.1e-19 99.8 74 67.6
Cpa.g.sc23.116 Carica papaya HOM05D000528 ORTHO05D001569 2.7e-18 95.1 72 66.7
COL.COLO4_34896 Corchorus olitorius HOM05D000528 ORTHO05D001569 1.8e-17 92.4 73 61.6
Manes.03G019000 Manihot esculenta HOM05D000528 ORTHO05D001569 4.0e-17 91.3 72 65.3
Atru.BG.16.p Acer truncatum HOM05D000528 ORTHO05D001569 1.2e-16 89.7 74 60.8
Atru.chr7.1325 Acer truncatum HOM05D000528 ORTHO05D001569 1.2e-16 89.7 74 60.8
TWI34G1986 Tripterygium wilfordii HOM05D000528 ORTHO05D001569 1.5e-16 89.4 72 62.5
PSO017G0622 Papaver somniferum HOM05D000528 ORTHO05D001569 2.6e-16 88.6 78 57.7
PSO675G2635 Papaver somniferum HOM05D000528 ORTHO05D001569 3.4e-16 88.2 73 61.6
FvH4_1g05140 Fragaria vesca HOM05D000528 ORTHO05D001569 4.4e-16 87.8 80 60.0
FAN26G0098 Fragaria x ananassa HOM05D000528 ORTHO05D001569 4.4e-16 87.8 80 60.0
FAN26G2632 Fragaria x ananassa HOM05D000528 ORTHO05D001569 4.4e-16 87.8 80 60.0
FAN19G0743 Fragaria x ananassa HOM05D000528 ORTHO05D001569 9.8e-16 86.7 80 58.8
ClCG11G002530 Citrullus lanatus HOM05D000528 ORTHO05D001569 1.3e-15 86.3 70 60.0
CsaV3_2G002330 Cucumis sativus L. HOM05D000528 ORTHO05D001569 1.3e-15 86.3 70 60.0
QL03p049169 Quercus lobata HOM05D000528 ORTHO05D001569 1.7e-15 85.9 71 60.6
Thecc.09G112700 Theobroma cacao HOM05D000528 ORTHO05D001569 1.7e-15 85.9 70 61.4
Cfa003276 Carpinus fangiana HOM05D000528 ORTHO05D001569 2.2e-15 85.5 71 60.6
Haze_25700 Corylus avellana HOM05D000528 ORTHO05D001569 2.2e-15 85.5 71 60.6
Actinidia32687 Actinidia chinensis HOM05D000528 ORTHO05D001569 2.8e-15 85.1 74 60.8
CANSAT21G0716 Cannabis sativa HOM05D000528 ORTHO05D000001 2.8e-15 85.1 73 56.2
Ciclev10010624m.g Citrus clementina HOM05D000528 ORTHO05D001569 2.8e-15 85.1 70 62.9
MELO3C004551.2 Cucumis melo HOM05D000528 ORTHO05D001569 2.8e-15 85.1 70 58.6
Eucgr.C03862 Eucalyptus grandis HOM05D000528 ORTHO05D001569 2.8e-15 85.1 75 56.0
Duzib150G0943 Durio zibethinus HOM05D000528 ORTHO05D001569 3.7e-15 84.7 70 60.0
Duzib168G2182 Durio zibethinus HOM05D000528 ORTHO05D001569 3.7e-15 84.7 70 61.4
Glyma.09G189000 Glycine max HOM05D000528 ORTHO05D001569 4.8e-15 84.3 76 53.9
Lalb_Chr14g0371441 Lupinus albus HOM05D000528 ORTHO05D001569 4.8e-15 84.3 75 53.3
MD02G1050300 Malus domestica HOM05D000528 ORTHO05D001569 4.8e-15 84.3 72 58.3
Potri.018G075300 Populus trichocarpa HOM05D000528 ORTHO05D001569 6.3e-15 84.0 77 53.2
CSS0010183 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D001569 8.3e-15 83.6 71 60.6
CSS0031605 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D001569 8.3e-15 83.6 71 60.6
Hma1.2p1_0518F.1_g171290 Hydrangea macrophylla HOM05D000528 ORTHO05D001569 8.3e-15 83.6 71 57.7
CiPaw.03G233900 Carya illinoinensis HOM05D000528 ORTHO05D001569 1.1e-14 83.2 71 59.2
Medtr6g086260 Medicago truncatula HOM05D000528 ORTHO05D001569 1.1e-14 83.2 71 57.7
Gohir.D05G023800 Gossypium hirsutum HOM05D000528 ORTHO05D001569 1.4e-14 82.8 70 60.0
Gorai.009G023900 Gossypium raimondii HOM05D000528 ORTHO05D001569 1.4e-14 82.8 70 60.0
MBI01_g11792_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D001569 1.4e-14 82.8 70 60.0
Sabra18G0066200 Salix brachista HOM05D000528 ORTHO05D001569 1.8e-14 82.4 70 55.7
Sed0002065 Sechium edule HOM05D000528 ORTHO05D001569 1.8e-14 82.4 70 57.1
vmacro06203 Vaccinium macrocarpon HOM05D000528 ORTHO05D001569 1.8e-14 82.4 68 60.3
Gohir.A05G022300 Gossypium hirsutum HOM05D000528 ORTHO05D001569 2.4e-14 82.0 72 58.3
Psat1g040480 Pisum sativum HOM05D000528 ORTHO05D001569 3.1e-14 81.6 70 57.1
Aqoxy7G03760 Aquilegia oxysepala HOM05D000528 ORTHO05D001569 5.4e-14 80.9 72 56.9
Rhsim03G0244100 Rhododendron simsii HOM05D000528 ORTHO05D001569 5.4e-14 80.9 68 60.3
Ca_25521_v3 Cicer arietinum L. HOM05D000528 ORTHO05D001569 7.0e-14 80.5 72 52.8
Lj7A647T56 Lonicera japonica HOM05D000528 ORTHO05D001569 9.1e-14 80.1 68 61.8
SGA_v2.0_scaffold37G14653 Striga asiatica HOM05D000528 ORTHO05D001569 9.1e-14 80.1 68 58.8
Nn1g00121 Nelumbo nucifera HOM05D000528 ORTHO05D001569 1.6e-13 79.3 72 55.6
AUR62011009 Chenopodium quinoa HOM05D000528 ORTHO05D001569 2.0e-13 79.0 71 52.1
AUR62021520 Chenopodium quinoa HOM05D000528 ORTHO05D001569 2.0e-13 79.0 71 52.1
Cc06_g09520 Coffea canephora HOM05D000528 ORTHO05D001569 2.0e-13 79.0 77 50.6
MD15G1187700 Malus domestica HOM05D000528 ORTHO05D001569 2.0e-13 79.0 71 54.9
SHI26919 Sapria himalayana HOM05D000528 ORTHO05D001569 2.0e-13 79.0 77 54.5
TAR362G0147 Trochodendron aralioides HOM05D000528 ORTHO05D001569 2.0e-13 79.0 71 56.3
unitig_0.g1091 Utricularia gibba HOM05D000528 ORTHO05D001569 2.0e-13 79.0 73 54.8
Dinv41589 Davidia involucrata HOM05D000528 ORTHO05D001569 2.7e-13 78.6 71 53.5
ECA234G4174 Erigeron canadensis HOM05D000528 ORTHO05D001569 2.7e-13 78.6 75 53.3
HanXRQChr12g0355451 Helianthus annuus HOM05D000528 ORTHO05D001569 2.7e-13 78.6 68 60.3
Lsat_1_v5_gn_5_100720 Lactuca sativa HOM05D000528 ORTHO05D001569 2.7e-13 78.6 72 56.9
VMungo0464G1860 Vigna mungo HOM05D000528 ORTHO05D001569 4.5e-13 77.8 70 54.3
EL10Ac8g18513 Beta vulgaris HOM05D000528 ORTHO05D001569 5.9e-13 77.4 71 52.1
PGR102G3236 Punica granatum HOM05D000528 ORTHO05D001569 5.9e-13 77.4 74 52.7
TPR.G30576 Trifolium pratense HOM05D000528 ORTHO05D001569 5.9e-13 77.4 70 54.3
Prupe.7G228800 Prunus persica HOM05D000528 ORTHO05D001569 7.7e-13 77.0 71 54.9
Lj2g0020151 Lotus japonicus HOM05D000528 ORTHO05D001569 1.0e-12 76.6 71 52.1
Nitab4.5_0000413g0170 Nicotiana tabacum HOM05D000528 ORTHO05D001569 1.3e-12 76.3 79 53.2
Nitab4.5_0001572g0010 Nicotiana tabacum HOM05D000528 ORTHO05D001569 1.3e-12 76.3 79 53.2
SalBow7G0484 Salvia bowleyana HOM05D000528 ORTHO05D001569 1.3e-12 76.3 68 57.4
Sc18g0001130 Simmondsia chinensis HOM05D000528 ORTHO05D001569 1.3e-12 76.3 68 54.4
Solyc03g070470.1 Solanum lycopersicum HOM05D000528 ORTHO05D001569 1.3e-12 76.3 68 60.3
Sopen03g019250 Solanum pennellii HOM05D000528 ORTHO05D001569 1.3e-12 76.3 68 60.3
PGSC0003DMG400007651 Solanum tuberosum HOM05D000528 ORTHO05D001569 1.3e-12 76.3 68 60.3
Migut.I00641 Erythranthe guttata HOM05D000528 ORTHO05D001569 1.7e-12 75.9 80 48.8
Phvul.004G161900 Phaseolus vulgaris HOM05D000528 ORTHO05D001569 1.7e-12 75.9 72 51.4
CAN.G184.57 Capsicum annuum HOM05D000528 ORTHO05D001569 2.3e-12 75.5 68 60.3
GSVIVG01015408001 Vitis vinifera HOM05D000528 ORTHO05D001569 2.3e-12 75.5 68 57.4
Peaxi162Scf00560g00025 Petunia axillaris HOM05D000528 ORTHO05D001569 2.9e-12 75.1 68 58.8
HPP92_002719 Vanilla planifolia HOM05D000528 ORTHO05D001569 3.8e-12 74.7 84 48.8
DCAR_028721 Daucus carota HOM05D000528 ORTHO05D001569 5.0e-12 74.3 76 50.0
arahy.Tifrunner.gnm1.ann1.35ZMHK Arachis hypogaea HOM05D000528 ORTHO05D001569 8.6e-12 73.6 72 44.4
arahy.Tifrunner.gnm1.ann1.CV2QSX Arachis hypogaea HOM05D000528 ORTHO05D001569 8.6e-12 73.6 72 44.4
Zm00001eb138130 Zea mays HOM05D000528 ORTHO05D001569 1.9e-11 72.4 72 47.2
Os04g0117300 Oryza sativa ssp. japonica HOM05D000528 ORTHO05D001569 2.5e-11 72.0 68 50.0
CDE05G2741 Ceratophyllum demersum HOM05D000528 ORTHO05D001569 3.3e-11 71.6 65 53.8
ATR0584G206 Amborella trichopoda HOM05D000528 ORTHO05D001569 2.3e-09 65.5 75 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3510 Anthoceros agrestis HOM05D000528 ORTHO05D001569 8.3e-07 57.0 74 47.3
Pp3c15_11320 Physcomitrium patens HOM05D000528 ORTHO05D001569 3.1e-06 55.1 62 48.4
Ah.03g134700 Amaranthus hybridus HOM05D000528 ORTHO05D001569 4.1e-06 54.7 77 44.2
PRCOL_00003539 Prasinoderma coloniale HOM05D000528 ORTHO05D001569 9.2e-06 53.5 68 39.7


User provided reference genes

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