Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 3.8e-73 278.1 143 100.0
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 3.2e-64 248.4 145 89.7
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 3.2e-64 248.4 144 89.6
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 1.2e-63 246.5 143 90.2
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 1.2e-63 246.5 143 90.2
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.0e-57 226.9 143 83.9
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 1.5e-56 223.0 141 83.0
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 4.2e-56 221.5 143 82.5
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 1.6e-55 219.5 140 82.1
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 2.0e-53 212.6 127 89.0
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 4.1e-51 204.9 140 77.1
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.9e-48 196.1 136 76.5
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.9e-48 196.1 136 76.5
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 3.7e-44 181.8 137 67.2
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 1.4e-43 179.9 137 62.0
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 2.4e-43 179.1 142 64.1
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 3.1e-43 178.7 136 64.0
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 1.2e-42 176.8 137 64.2
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 1.6e-42 176.4 136 61.8
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 2.7e-42 175.6 137 64.2
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 3.5e-42 175.3 140 62.9
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 3.5e-42 175.3 137 63.5
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 1.0e-41 173.7 140 61.4
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 1.0e-41 173.7 135 63.0
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.3e-41 173.3 140 61.4
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.3e-41 173.3 140 61.4
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 1.3e-41 173.3 137 61.3
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.9e-41 172.2 140 61.4
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 5.0e-41 171.4 137 61.3
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 1.1e-40 170.2 138 62.3
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 1.5e-40 169.9 137 61.3
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 1.5e-40 169.9 137 61.3
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 2.5e-40 169.1 140 59.3
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 4.2e-40 168.3 140 58.6
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 4.2e-40 168.3 140 62.1
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 7.2e-40 167.5 123 72.4
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 1.6e-39 166.4 141 63.8
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.6e-39 166.4 140 57.1
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.1e-39 166.0 140 57.1
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 2.8e-39 165.6 137 59.1
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 2.8e-39 165.6 137 57.7
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 3.6e-39 165.2 140 62.1
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 4.7e-39 164.9 141 59.6
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 8.0e-39 164.1 137 57.7
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 1.4e-38 163.3 137 59.9
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 2.3e-38 162.5 137 61.3
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 2.3e-38 162.5 137 59.1
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 3.0e-38 162.2 140 55.0
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 4.0e-38 161.8 125 64.8
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 6.8e-38 161.0 137 55.5
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 6.8e-38 161.0 137 55.5
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 8.9e-38 160.6 137 58.4
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 8.9e-38 160.6 135 59.3
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 8.9e-38 160.6 135 59.3
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 1.2e-37 160.2 139 59.0
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.5e-37 159.8 125 63.2
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 2.0e-37 159.5 136 59.6
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 4.4e-37 158.3 133 59.4
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 1.7e-36 156.4 126 65.1
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 1.7e-36 156.4 136 57.4
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 2.2e-36 156.0 141 55.3
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 2.2e-36 156.0 137 56.9
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 2.8e-36 155.6 125 63.2
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 4.9e-36 154.8 136 57.4
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 4.9e-36 154.8 128 62.5
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 1.1e-35 153.7 126 65.1
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 1.4e-35 153.3 137 56.2
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 1.4e-35 153.3 136 57.4
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 1.8e-35 152.9 136 56.6
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 3.1e-35 152.1 130 60.0
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 4.1e-35 151.8 138 55.8
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 9.2e-35 150.6 124 59.7
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 1.6e-34 149.8 137 58.4
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 2.7e-34 149.1 128 60.2
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 5.9e-34 147.9 137 56.2
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 1.7e-33 146.4 128 60.9
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 2.9e-33 145.6 141 56.7
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 5.0e-33 144.8 120 60.8
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 1.5e-32 143.3 137 56.9
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 2.5e-32 142.5 137 53.3
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 3.3e-32 142.1 133 53.4
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 3.3e-32 142.1 130 56.2
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 3.6e-31 138.7 138 54.3
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 2.3e-30 136.0 122 53.3
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 5.2e-30 134.8 137 54.0
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 2.6e-29 132.5 136 50.7
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 3.4e-29 132.1 135 49.6
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 1.3e-28 130.2 114 57.9
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.7e-28 129.8 133 51.1
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.7e-28 129.8 120 55.0
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 2.2e-28 129.4 125 56.8
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 4.1e-27 125.2 134 49.3
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 1.5e-24 116.7 105 56.2
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 1.6e-23 113.2 135 48.1
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 8.0e-23 110.9 133 46.6
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 1.1e-22 110.5 132 47.0
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 1.5e-21 106.7 98 57.1
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 1.5e-21 106.7 135 47.4
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 7.5e-21 104.4 89 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 6.4e-20 101.3 130 43.8
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.5e-08 62.8 51 62.7
MBI05_g24448_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.4e-06 57.0 70 50.0


User provided reference genes

Program Settings