Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.6e-74 282.7 144 100.0
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 1.5e-61 239.6 144 86.8
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.2e-60 235.7 145 86.9
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.2e-60 235.7 145 86.9
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.2e-60 235.7 145 86.9
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 1.2e-58 229.9 145 84.8
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 1.9e-56 222.6 148 81.8
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 7.5e-53 210.7 148 78.4
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 9.8e-53 210.3 153 78.4
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 2.2e-52 209.1 153 77.8
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 2.2e-52 209.1 153 77.8
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 2.9e-52 208.8 151 78.8
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 4.9e-52 208.0 153 75.8
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 4.9e-52 208.0 153 75.8
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 4.1e-51 204.9 150 77.3
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 6.0e-50 201.1 150 76.0
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 6.0e-50 201.1 150 76.0
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 6.6e-49 197.6 153 73.2
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.1e-47 192.6 150 74.0
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 6.8e-46 187.6 152 73.0
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 4.4e-45 184.9 154 69.5
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 7.8e-42 174.1 153 66.7
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 2.1e-39 166.0 152 66.4
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 1.7e-28 129.8 154 58.4
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 1.7e-28 129.8 156 55.8
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 1.1e-27 127.1 158 57.6
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 4.1e-27 125.2 157 54.8
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 5.4e-27 124.8 159 55.3
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 6.0e-26 121.3 161 52.2
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 1.2e-23 113.6 157 50.3
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 1.6e-23 113.2 157 51.6
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 2.0e-21 106.3 162 46.3
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 7.6e-21 104.4 157 51.0
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 7.6e-21 104.4 157 51.0
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 2.2e-20 102.8 157 48.4
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 6.4e-20 101.3 157 48.4
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 8.4e-20 100.9 158 47.5
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 8.4e-20 100.9 158 47.5
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 8.4e-20 100.9 159 48.4
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 8.4e-20 100.9 150 50.7
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 1.1e-19 100.5 159 47.8
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 6.0e-18 94.7 157 43.3
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 7.8e-18 94.4 157 47.1
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 1.3e-17 93.6 154 44.8
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 3.0e-17 92.4 157 43.3
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 3.0e-17 92.4 157 43.3
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 5.1e-17 91.7 152 47.4
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 3.1e-14 82.4 120 49.2
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 9.0e-14 80.9 99 49.5
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 2.6e-13 79.3 97 51.5
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 4.5e-13 78.6 120 47.5
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 5.8e-13 78.2 130 43.1
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 3.8e-12 75.5 122 43.4
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 3.8e-12 75.5 115 47.0
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 4.9e-12 75.1 123 45.5
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 4.9e-12 75.1 114 45.6
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 1.1e-11 73.9 106 44.3
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 1.4e-11 73.6 107 47.7
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.4e-11 73.6 106 49.1
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 1.9e-11 73.2 102 44.1
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.9e-11 73.2 95 47.4
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 3.2e-11 72.4 115 43.5
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 4.2e-11 72.0 115 43.5
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 4.2e-11 72.0 115 43.5
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 9.3e-11 70.9 96 50.0
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.1e-10 69.7 106 47.2
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 2.1e-10 69.7 106 47.2
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 2.1e-10 69.7 97 50.5
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 3.5e-10 68.9 97 50.5
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 4.6e-10 68.6 127 41.7
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 7.9e-10 67.8 99 46.5
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 7.9e-10 67.8 123 39.0
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 1.0e-09 67.4 110 45.5
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 3.9e-09 65.5 106 41.5
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 5.1e-09 65.1 112 42.0
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 6.7e-09 64.7 125 44.8
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 6.7e-09 64.7 119 40.3
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 6.7e-09 64.7 98 44.9
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 8.7e-09 64.3 98 44.9
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 8.7e-09 64.3 120 40.0
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.7e-09 64.3 120 40.0
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 8.7e-09 64.3 102 45.1
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 8.7e-09 64.3 126 40.5
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.1e-08 63.9 118 40.7
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 1.5e-08 63.5 116 44.8
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.5e-08 63.5 120 40.0
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 1.5e-08 63.5 102 45.1
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.5e-08 63.5 113 45.1
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 1.5e-08 63.5 105 44.8
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 1.5e-08 63.5 107 44.9
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 1.9e-08 63.2 118 39.0
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 1.9e-08 63.2 95 47.4
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 2.5e-08 62.8 98 45.9
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 3.3e-08 62.4 136 39.7
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 3.3e-08 62.4 144 41.0
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 3.3e-08 62.4 121 39.7
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 3.3e-08 62.4 110 41.8
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 4.3e-08 62.0 96 43.8
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 4.3e-08 62.0 123 37.4
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 4.3e-08 62.0 114 43.9
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 5.6e-08 61.6 88 45.5
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 5.6e-08 61.6 88 45.5
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 5.6e-08 61.6 93 45.2
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 5.6e-08 61.6 142 38.7
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 7.4e-08 61.2 121 38.8
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 9.6e-08 60.8 110 43.6
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 1.3e-07 60.5 93 48.4
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 1.3e-07 60.5 116 39.7
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 1.6e-07 60.1 115 41.7
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 2.8e-07 59.3 120 40.0
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 3.7e-07 58.9 126 42.9
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 3.7e-07 58.9 122 40.2
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 4.8e-07 58.5 93 39.8
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 4.8e-07 58.5 108 40.7
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 8.1e-07 57.8 110 39.1
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 8.1e-07 57.8 86 45.3
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 8.1e-07 57.8 111 39.6
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 8.1e-07 57.8 129 38.0
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.4e-06 57.0 97 35.1
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 1.4e-06 57.0 118 38.1
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 2.4e-06 56.2 98 41.8
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 2.4e-06 56.2 98 41.8
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 3.1e-06 55.8 90 37.8
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 6.9e-06 54.7 128 36.7
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 9.0e-06 54.3 144 35.4


User provided reference genes

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