Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 4.4e-178 627.9 322 100.0
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 2.7e-167 592.0 322 93.8
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.9e-165 585.9 322 92.5
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.9e-165 585.9 322 92.5
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 6.8e-163 577.4 322 91.6
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.3e-161 573.2 322 91.0
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.3e-161 573.2 322 91.3
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 2.9e-161 572.0 311 93.6
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 6.4e-161 570.9 322 90.7
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 6.4e-161 570.9 321 90.7
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 7.1e-160 567.4 311 92.6
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 9.2e-160 567.0 322 90.4
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 9.2e-160 567.0 322 90.4
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 2.7e-159 565.5 322 90.4
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 4.6e-159 564.7 322 89.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 3.0e-158 562.0 322 89.1
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.2e-156 556.6 335 86.9
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 4.7e-156 554.7 311 91.6
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 8.9e-155 550.4 331 86.4
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 5.6e-149 531.2 320 85.9
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 5.1e-142 508.1 323 80.5
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 7.9e-135 484.2 322 75.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 3.9e-134 481.9 321 76.0
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 8.7e-134 480.7 322 74.8
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 9.6e-133 477.2 321 76.0
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 2.1e-132 476.1 321 74.1
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 2.1e-132 476.1 324 75.3
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.7e-132 475.3 322 76.4
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 6.2e-132 474.6 322 74.2
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 8.1e-132 474.2 319 76.2
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.1e-131 472.2 320 74.7
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 4.0e-131 471.9 320 73.8
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 6.9e-131 471.1 312 76.3
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 6.9e-131 471.1 321 74.5
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 9.0e-131 470.7 323 74.9
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 9.0e-131 470.7 319 73.7
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 2.0e-130 469.5 323 73.7
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 3.4e-130 468.8 324 72.8
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 4.5e-130 468.4 324 75.3
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 5.8e-130 468.0 320 73.8
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.2e-129 466.1 324 74.7
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.2e-129 466.1 324 75.0
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 6.5e-129 464.5 316 74.4
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 8.4e-129 464.2 331 72.5
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.9e-128 463.0 320 72.8
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.9e-128 463.0 319 73.4
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 1.9e-128 463.0 323 72.8
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 2.5e-128 462.6 322 73.6
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 3.2e-128 462.2 324 73.8
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 4.2e-128 461.8 321 72.3
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 4.2e-128 461.8 319 72.7
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 4.2e-128 461.8 323 72.8
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 5.5e-128 461.5 256 91.4
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 7.1e-128 461.1 331 72.2
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 7.1e-128 461.1 321 72.9
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 7.1e-128 461.1 358 67.6
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 9.3e-128 460.7 326 72.7
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 1.2e-127 460.3 324 73.1
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 1.6e-127 459.9 316 73.7
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 1.6e-127 459.9 339 71.1
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 4.6e-127 458.4 321 72.9
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 7.9e-127 457.6 322 72.4
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 1.8e-126 456.4 318 73.0
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 3.0e-126 455.7 316 71.5
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 6.7e-126 454.5 316 71.2
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 6.7e-126 454.5 316 71.8
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 2.5e-125 452.6 316 72.8
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 3.3e-125 452.2 357 66.7
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 4.3e-125 451.8 324 70.7
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 5.7e-125 451.4 333 69.7
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 7.4e-125 451.1 320 69.7
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.6e-124 449.9 322 70.5
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 8.2e-124 447.6 318 71.7
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.4e-123 446.0 338 68.3
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 4.1e-123 445.3 317 72.6
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.5e-122 443.4 316 71.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 5.8e-122 441.4 318 70.1
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 7.6e-122 441.0 318 70.1
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.3e-121 440.3 331 68.3
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 2.2e-121 439.5 318 69.5
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.2e-121 439.5 320 70.0
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 3.8e-121 438.7 319 69.6
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 1.1e-120 437.2 318 71.1
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.9e-120 436.4 312 70.8
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 4.2e-120 435.3 368 63.0
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.5e-119 432.2 315 74.6
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 1.3e-118 430.3 310 71.9
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.3e-118 429.5 290 74.5
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 3.0e-118 429.1 358 63.4
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 6.7e-118 427.9 292 73.3
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 8.7e-118 427.6 324 67.6
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.1e-117 427.2 336 66.4
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 1.9e-117 426.4 329 72.0
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 5.7e-117 424.9 321 67.0
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 5.7e-117 424.9 318 67.6
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.8e-116 422.5 341 66.0
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 6.3e-116 421.4 259 79.5
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 4.1e-115 418.7 322 67.7
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 1.2e-114 417.2 313 67.7
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 7.7e-114 414.5 284 73.2
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 6.5e-113 411.4 386 59.1
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.7e-111 406.0 321 67.6
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 3.3e-109 399.1 311 68.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.8e-107 393.3 265 72.8
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.5e-106 390.2 266 73.7
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 5.0e-105 385.2 250 76.0
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.1e-101 374.0 257 74.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 5.7e-101 371.7 317 60.9
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 5.9e-98 361.7 308 59.1
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 8.0e-95 351.3 330 56.7
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 8.5e-89 331.3 265 63.0
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 9.8e-85 317.8 328 57.0
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 2.2e-84 316.6 309 57.6
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 4.1e-83 312.4 207 73.4
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 3.5e-82 309.3 336 50.9
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.5e-80 303.9 283 55.1
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 1.2e-79 300.8 322 53.4
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 1.8e-78 297.0 198 75.3
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 4.5e-74 282.3 331 50.2
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 8.9e-70 268.1 201 69.7
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.1e-67 261.2 226 60.2
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.0e-65 254.6 178 72.5
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.0e-62 244.6 190 65.8
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.4e-62 244.2 345 38.0
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.4e-60 235.3 189 65.1
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.9e-59 233.8 345 40.0
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 4.6e-58 229.2 130 84.6
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 9.5e-56 221.5 201 60.2
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.1e-55 220.3 203 59.6
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 3.6e-55 219.5 351 41.6
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 8.1e-55 218.4 168 66.7
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.9e-51 207.2 129 77.5
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.3e-48 196.4 133 70.7
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-46 191.4 133 68.4
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.5e-45 187.6 299 40.5
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.4e-45 186.4 296 37.2
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 5.8e-45 185.7 155 63.9
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 9.2e-43 178.3 143 61.5
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.4e-38 164.5 363 33.1
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 1.1e-32 144.8 125 61.6
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.3e-32 143.3 129 57.4
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 7.9e-26 122.1 94 70.2
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.3e-25 120.6 131 50.4
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 8.1e-23 112.1 86 68.6
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 9.0e-22 108.6 308 31.8
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 5.5e-19 99.4 79 63.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 2.7e-18 97.1 67 71.6
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 2.4e-14 84.0 71 63.4
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-07 61.6 39 76.9


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