Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23335 Brassica carinata HOM05D006881 ORTHO05D008423 4.6e-67 258.1 161 100.0
BcaC03g13606 Brassica carinata HOM05D006881 ORTHO05D008423 6.6e-66 254.2 161 97.5
C02p10000 Brassica napus HOM05D006881 ORTHO05D008423 6.6e-66 254.2 161 97.5
CARHR194480 Cardamine hirsuta HOM05D006881 ORTHO05D008423 5.2e-63 244.6 160 93.8
Sp6g25790 Schrenkiella parvula HOM05D006881 ORTHO05D008423 9.0e-63 243.8 160 93.1
Thhalv10014829m.g Eutrema salsugineum HOM05D006881 ORTHO05D008423 2.6e-62 242.3 161 92.5
Carub.0006s1681 Capsella rubella HOM05D006881 ORTHO05D008423 3.4e-62 241.9 160 93.1
AT5G18540 Arabidopsis thaliana HOM05D006881 ORTHO05D008423 2.4e-60 235.7 162 93.2
AL6G29810 Arabidopsis lyrata HOM05D006881 ORTHO05D008423 3.2e-60 235.3 160 92.5
Aa31LG11G11080 Aethionema arabicum HOM05D006881 ORTHO05D008423 1.4e-55 219.9 161 86.3
A02p04970 Brassica napus HOM05D006881 ORTHO05D008423 2.4e-52 209.1 162 86.4
A10p21020 Brassica napus HOM05D006881 ORTHO05D008423 7.9e-51 204.1 166 83.1
BraA02t05456Z Brassica rapa HOM05D006881 ORTHO05D008423 1.0e-50 203.8 164 84.1
BraA10t44166Z Brassica rapa HOM05D006881 ORTHO05D008423 1.3e-48 196.8 169 83.4
BolC2t06902H Brassica oleracea HOM05D006881 ORTHO05D008423 4.0e-47 191.8 178 64.6
Sabra08G0154800 Salix brachista HOM05D006881 ORTHO05D008423 2.4e-39 166.0 162 64.2
Duzib212G0198 Durio zibethinus HOM05D006881 ORTHO05D008423 1.5e-38 163.3 161 70.8
Thecc.04G282000 Theobroma cacao HOM05D006881 ORTHO05D008423 1.5e-38 163.3 164 72.0
THA.LOC104818851 Tarenaya hassleriana HOM05D006881 ORTHO05D008423 1.3e-37 160.2 121 71.9
Sopen01g029530 Solanum pennellii HOM05D006881 ORTHO05D008423 2.2e-37 159.5 161 65.2
Atru.chr4.2800 Acer truncatum HOM05D006881 ORTHO05D008423 3.8e-37 158.7 164 68.3
Cpa.g.sc16.153 Carica papaya HOM05D006881 ORTHO05D008423 4.9e-37 158.3 107 76.6
Ciclev10005896m.g Citrus clementina HOM05D006881 ORTHO05D008423 1.1e-36 157.1 161 65.8
Potri.008G216700 Populus trichocarpa HOM05D006881 ORTHO05D008423 1.1e-36 157.1 162 62.3
CAN.G223.19 Capsicum annuum HOM05D006881 ORTHO05D008423 1.4e-36 156.8 113 71.7
BcaB08g36664 Brassica carinata HOM05D006881 ORTHO05D008423 1.9e-36 156.4 161 72.0
CiPaw.01G150600 Carya illinoinensis HOM05D006881 ORTHO05D008423 9.3e-36 154.1 119 66.4
Solyc01g067580.4 Solanum lycopersicum HOM05D006881 ORTHO05D008423 1.6e-35 153.3 113 69.9
Peaxi162Scf00386g00414 Petunia axillaris HOM05D006881 ORTHO05D008423 2.1e-35 152.9 110 75.5
vmacro15245 Vaccinium macrocarpon HOM05D006881 ORTHO05D008423 2.1e-35 152.9 116 71.6
Manes.03G192600 Manihot esculenta HOM05D006881 ORTHO05D008423 6.0e-35 151.4 111 73.0
Migut.G00182 Erythranthe guttata HOM05D006881 ORTHO05D008423 7.9e-35 151.0 161 64.6
unitig_748.g8741 Utricularia gibba HOM05D006881 ORTHO05D008423 1.3e-34 150.2 119 66.4
Sed0007304 Sechium edule HOM05D006881 ORTHO05D008423 1.8e-34 149.8 117 65.8
PGSC0003DMG400010658 Solanum tuberosum HOM05D006881 ORTHO05D008423 1.8e-34 149.8 113 69.9
Actinidia00041 Actinidia chinensis HOM05D006881 ORTHO05D008423 2.3e-34 149.4 126 68.3
TAR636G2672 Trochodendron aralioides HOM05D006881 ORTHO05D008423 3.0e-34 149.1 106 73.6
Gohir.D02G053300 Gossypium hirsutum HOM05D006881 ORTHO05D008423 3.9e-34 148.7 160 66.2
ClCG05G005980 Citrullus lanatus HOM05D006881 ORTHO05D008423 5.1e-34 148.3 120 66.7
Gohir.A02G048200 Gossypium hirsutum HOM05D006881 ORTHO05D008423 5.1e-34 148.3 160 65.6
Dinv38306 Davidia involucrata HOM05D006881 ORTHO05D008423 8.7e-34 147.5 104 75.0
QL06p008283 Quercus lobata HOM05D006881 ORTHO05D008423 8.7e-34 147.5 112 68.8
TPR.G23710 Trifolium pratense HOM05D006881 ORTHO05D008423 1.5e-33 146.7 109 67.9
MSTRG.10082 Avicennia marina HOM05D006881 ORTHO05D008423 1.9e-33 146.4 161 64.6
Oeu021111.1 Olea europaea HOM05D006881 ORTHO05D008423 2.5e-33 146.0 115 67.8
Lsat_1_v5_gn_3_24181 Lactuca sativa HOM05D006881 ORTHO05D008423 4.3e-33 145.2 112 71.4
MBI19_g24002_MAGBIO Magnolia biondii HOM05D006881 ORTHO05D008423 5.7e-33 144.8 124 66.1
GSVIVG01017769001 Vitis vinifera HOM05D006881 ORTHO05D008423 5.7e-33 144.8 165 63.0
Gorai.005G059100 Gossypium raimondii HOM05D006881 ORTHO05D008423 7.4e-33 144.4 156 68.6
CSS0005297 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 9.7e-33 144.1 120 69.2
CSS0009612 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 9.7e-33 144.1 120 69.2
Eucgr.B01283 Eucalyptus grandis HOM05D006881 ORTHO05D008423 9.7e-33 144.1 113 68.1
Psat1g151960 Pisum sativum HOM05D006881 ORTHO05D008423 1.3e-32 143.7 102 70.6
Cc03_g02070 Coffea canephora HOM05D006881 ORTHO05D008423 1.6e-32 143.3 160 63.8
HanXRQChr17g0536111 Helianthus annuus HOM05D006881 ORTHO05D008423 1.6e-32 143.3 105 73.3
SalBow2G0124 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.6e-32 143.3 119 66.4
SalBow2G2956 Salvia bowleyana HOM05D006881 ORTHO05D008423 1.6e-32 143.3 119 66.4
Prupe.1G139200 Prunus persica HOM05D006881 ORTHO05D008423 2.2e-32 142.9 121 64.5
PSO170G5464 Papaver somniferum HOM05D006881 ORTHO05D008423 2.8e-32 142.5 111 67.6
MD13G1170800 Malus domestica HOM05D006881 ORTHO05D008423 3.7e-32 142.1 118 67.8
PSO210G1559 Papaver somniferum HOM05D006881 ORTHO05D008423 3.7e-32 142.1 123 63.4
EL10Ac3g06585 Beta vulgaris HOM05D006881 ORTHO05D008423 1.1e-31 140.6 112 66.1
SGA_v2.0_scaffold86G26903 Striga asiatica HOM05D006881 ORTHO05D008423 1.4e-31 140.2 116 66.4
arahy.Tifrunner.gnm1.ann1.E8HU74 Arachis hypogaea HOM05D006881 ORTHO05D008423 1.8e-31 139.8 102 69.6
PGR031G0133 Punica granatum HOM05D006881 ORTHO05D008423 3.1e-31 139.0 117 65.0
ECA246G4172 Erigeron canadensis HOM05D006881 ORTHO05D008423 4.1e-31 138.7 111 70.3
Lalb_Chr18g0051811 Lupinus albus HOM05D006881 ORTHO05D008423 4.1e-31 138.7 114 64.9
CANSAT78G0809 Cannabis sativa HOM05D006881 ORTHO05D008423 5.3e-31 138.3 107 72.0
DCAR_024558 Daucus carota HOM05D006881 ORTHO05D008423 1.2e-30 137.1 112 69.6
Glyma.09G046900 Glycine max HOM05D006881 ORTHO05D008423 2.0e-30 136.3 102 70.6
RcHm_v2.0_Chr4g0421611 Rosa chinensis HOM05D006881 ORTHO05D008423 3.4e-30 135.6 103 72.8
Glyma.15G154400 Glycine max HOM05D006881 ORTHO05D008423 4.5e-30 135.2 102 71.6
VMungo1309G2079 Vigna mungo HOM05D006881 ORTHO05D008423 4.5e-30 135.2 102 72.5
FvH4_4g17670 Fragaria vesca HOM05D006881 ORTHO05D008423 5.9e-30 134.8 119 64.7
FAN12G2006 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.9e-30 134.8 119 64.7
FAN12G2996 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.9e-30 134.8 119 64.7
FAN17G1543 Fragaria x ananassa HOM05D006881 ORTHO05D008423 5.9e-30 134.8 119 64.7
Aqoxy2G03052 Aquilegia oxysepala HOM05D006881 ORTHO05D008423 7.6e-30 134.4 117 65.8
Phvul.009G245900 Phaseolus vulgaris HOM05D006881 ORTHO05D008423 7.6e-30 134.4 111 66.7
Nitab4.5_0013689g0020 Nicotiana tabacum HOM05D006881 ORTHO05D008423 1.3e-29 133.7 106 68.9
FAN07G1171 Fragaria x ananassa HOM05D006881 ORTHO05D008423 2.2e-29 132.9 119 63.9
Zm00001eb330210 Zea mays HOM05D006881 ORTHO05D008423 6.5e-29 131.3 117 60.7
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 8.5e-29 131.0 109 61.5
CsaV3_3G014430 Cucumis sativus L. HOM05D006881 ORTHO05D008423 8.5e-29 131.0 163 60.1
TWI09G1277 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 8.5e-29 131.0 110 64.5
arahy.Tifrunner.gnm1.ann1.NXX1KJ Arachis hypogaea HOM05D006881 ORTHO05D008423 1.4e-28 130.2 121 59.5
MELO3C006643.2 Cucumis melo HOM05D006881 ORTHO05D008423 3.2e-28 129.0 120 60.8
Hund20570 Selenicereus undatus HOM05D006881 ORTHO05D008423 3.2e-28 129.0 123 59.3
HPP92_025226 Vanilla planifolia HOM05D006881 ORTHO05D008423 1.2e-27 127.1 109 62.4
Lj6g0021421 Lotus japonicus HOM05D006881 ORTHO05D008423 1.6e-27 126.7 102 66.7
Medtr2g437470 Medicago truncatula HOM05D006881 ORTHO05D008423 1.6e-27 126.7 106 63.2
HPP92_025214 Vanilla planifolia HOM05D006881 ORTHO05D008423 2.1e-27 126.3 108 63.0
Os07g0669600 Oryza sativa ssp. japonica HOM05D006881 ORTHO05D008423 4.6e-27 125.2 109 62.4
SMO367G0816 Selaginella moellendorffii HOM05D006881 ORTHO05D008423 1.3e-26 123.6 107 61.7
Nn3g21363 Nelumbo nucifera HOM05D006881 ORTHO05D008423 3.9e-26 122.1 82 75.6
CDE09G1155 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 8.8e-26 120.9 102 68.6
Hma1.2p1_0698F.1_g205340 Hydrangea macrophylla HOM05D006881 ORTHO05D008423 8.8e-26 120.9 82 75.6
Rhsim02G0011900 Rhododendron simsii HOM05D006881 ORTHO05D008423 1.5e-25 120.2 82 76.8
C09p57950 Brassica napus HOM05D006881 ORTHO05D008423 5.7e-25 118.2 207 52.7
BolC9t58662H Brassica oleracea HOM05D006881 ORTHO05D008423 7.4e-25 117.9 212 51.9
SHI00284 Sapria himalayana HOM05D006881 ORTHO05D008423 2.2e-24 116.3 85 68.2
Sc19g0005040 Simmondsia chinensis HOM05D006881 ORTHO05D008423 2.2e-24 116.3 123 53.7
Ah.13g074590 Amaranthus hybridus HOM05D006881 ORTHO05D008423 6.3e-24 114.8 124 54.0
ATR0706G047 Amborella trichopoda HOM05D006881 ORTHO05D008423 8.2e-24 114.4 111 57.7
CSS0034417 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 8.2e-24 114.4 87 72.4
SEGI_11441 Sequoiadendron giganteum HOM05D006881 ORTHO05D008423 1.2e-22 110.5 115 48.7
BcaC04g18670 Brassica carinata HOM05D006881 ORTHO05D008423 2.9e-21 105.9 91 61.5
Haze_01236 Corylus avellana HOM05D006881 ORTHO05D008423 2.5e-20 102.8 84 66.7
Pp3c15_10020 Physcomitrium patens HOM05D006881 ORTHO05D008423 5.5e-20 101.7 122 50.0
TWI73G0635 Tripterygium wilfordii HOM05D006881 ORTHO05D008423 9.4e-20 100.9 107 53.3
CSS0015929 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 2.1e-19 99.8 176 52.3
Mapoly0010s0048 Marchantia polymorpha HOM05D006881 ORTHO05D008423 2.6e-17 92.8 116 47.4
CDE02G3907 Ceratophyllum demersum HOM05D006881 ORTHO05D008423 8.2e-16 87.8 78 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1971 Anthoceros agrestis HOM05D006881 ORTHO05D008423 2.0e-14 83.2 81 54.3
AUR62040384 Chenopodium quinoa HOM05D006881 ORTHO05D008423 3.4e-14 82.4 53 73.6
CBR_g46646 Chara braunii HOM05D006881 ORTHO05D008423 7.2e-12 74.7 86 46.5
CSS0002463 Camellia sinensis var. sinensis HOM05D006881 ORTHO05D008423 1.2e-11 73.9 105 48.6
Nitab4.5_0000784g0080 Nicotiana tabacum HOM05D006881 ORTHO05D008423 2.6e-06 56.2 118 39.8


User provided reference genes

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