Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23323 Brassica carinata HOM05D006718 ORTHO05D008492 8.0e-82 307.0 150 100.0
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 2.3e-36 156.0 161 56.5
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 3.3e-35 152.1 156 58.3
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 4.3e-35 151.8 152 57.9
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 6.2e-34 147.9 157 54.1
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 1.8e-33 146.4 155 56.8
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 1.5e-32 143.3 156 55.8
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 2.3e-28 129.4 154 50.6
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 5.1e-28 128.3 152 49.3
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 3.3e-27 125.6 125 56.0
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 5.6e-27 124.8 153 49.7
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 5.8e-24 114.8 155 45.8
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 3.5e-21 105.5 159 44.7
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 6.0e-21 104.8 184 39.7
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 1.3e-20 103.6 105 53.3
C02p09870 Brassica napus HOM05D006718 ORTHO05D008492 2.4e-17 92.8 94 62.8
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 2.4e-17 92.8 156 39.7
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 9.3e-14 80.9 114 42.1
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 2.1e-13 79.7 222 31.1
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 4.6e-13 78.6 111 42.3
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 4.6e-13 78.6 112 39.3
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 4.6e-13 78.6 112 40.2
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 1.4e-12 77.0 126 38.9
BolC2t06894H Brassica oleracea HOM05D006718 ORTHO05D008492 2.3e-12 76.3 89 55.1
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 5.1e-12 75.1 129 35.7
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 5.1e-12 75.1 126 41.3
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 4.3e-11 72.0 112 42.9
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 2.2e-10 69.7 110 40.9
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 2.8e-10 69.3 112 40.2
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 3.7e-10 68.9 130 35.4
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 4.8e-10 68.6 109 38.5
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 1.1e-09 67.4 126 34.1
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 1.1e-09 67.4 135 34.8
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.4e-09 67.0 112 39.3
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 2.4e-09 66.2 127 34.6
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 4.1e-09 65.5 127 35.4
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 6.9e-09 64.7 137 29.9
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 6.9e-09 64.7 110 39.1
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 9.1e-09 64.3 110 38.2
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 9.1e-09 64.3 138 34.8
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 1.2e-08 63.9 114 39.5
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.2e-08 63.9 114 39.5
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 1.5e-08 63.5 109 35.8
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.5e-08 63.5 113 38.1
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 2.0e-08 63.2 112 38.4
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 2.6e-08 62.8 87 42.5
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 2.6e-08 62.8 111 36.9
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 4.5e-08 62.0 129 36.4
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 4.5e-08 62.0 109 36.7
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 4.5e-08 62.0 121 33.9
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 5.9e-08 61.6 122 39.3
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 5.9e-08 61.6 127 35.4
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 1.7e-07 60.1 115 33.0
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 2.2e-07 59.7 108 32.4
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 2.2e-07 59.7 108 32.4
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 2.2e-07 59.7 129 34.1
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 2.2e-07 59.7 111 39.6
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 2.2e-07 59.7 120 33.3
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 2.9e-07 59.3 111 36.9
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 2.9e-07 59.3 152 32.9
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 3.8e-07 58.9 121 36.4
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 5.0e-07 58.5 122 38.5
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 6.5e-07 58.2 105 34.3
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 1.4e-06 57.0 109 33.9
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 1.9e-06 56.6 125 34.4
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 2.5e-06 56.2 124 37.1
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 3.2e-06 55.8 133 34.6
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 3.2e-06 55.8 105 35.2
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 4.2e-06 55.5 154 29.9
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 5.5e-06 55.1 110 38.2
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 7.2e-06 54.7 110 35.5
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 7.2e-06 54.7 105 33.3


User provided reference genes

Program Settings