Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 4.7e-160 567.8 277 100.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 2.9e-130 468.8 274 82.8
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 2.6e-126 455.7 274 82.1
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 3.4e-126 455.3 274 82.1
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.1e-124 450.3 274 82.8
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-124 449.1 274 80.7
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 9.2e-124 447.2 282 78.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-121 439.5 277 76.9
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 3.4e-118 428.7 278 75.9
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 2.0e-115 419.5 272 76.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.0e-115 419.5 267 76.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.5e-113 413.3 287 73.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-109 399.4 277 71.8
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-105 386.7 280 72.1
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 6.8e-103 377.9 279 69.9
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 6.8e-103 377.9 279 69.9
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 6.8e-103 377.9 279 69.9
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.5e-102 376.7 287 71.1
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 5.8e-102 374.8 279 69.5
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.4e-100 370.2 288 69.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 3.9e-90 335.5 287 64.8
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-85 320.5 277 62.5
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.1e-82 308.5 299 58.9
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 7.6e-70 268.1 287 53.7
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.3e-69 267.3 291 54.0
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.9e-65 253.4 286 52.1
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.3e-65 252.7 289 52.6
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.3e-65 252.3 288 49.7
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-63 247.3 280 52.5
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.2e-61 240.0 286 51.0
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-60 237.7 278 48.9
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-60 237.3 280 50.4
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.4e-60 237.3 280 50.4
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 3.2e-60 236.1 276 51.8
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.7e-59 233.0 284 49.3
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.0e-58 229.6 290 51.0
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 8.2e-56 221.5 288 47.6
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 8.2e-56 221.5 309 48.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 7.7e-46 188.3 290 43.8
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.9e-45 186.4 271 43.5
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.1e-43 180.3 288 42.4
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-42 177.6 232 45.7
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 6.3e-40 168.7 96 84.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 8.2e-40 168.3 302 38.1
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 3.2e-36 156.4 305 35.1
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 5.5e-36 155.6 318 36.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 5.5e-36 155.6 318 36.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 2.7e-35 153.3 304 39.1
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.0e-34 151.4 321 37.7
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.4e-33 146.0 321 37.7
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.3e-32 144.4 311 37.9
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.8e-32 142.5 318 36.8
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 6.3e-32 142.1 316 37.7
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.1e-31 141.4 310 35.2
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 1.1e-31 141.4 313 35.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.8e-31 140.6 298 35.2
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 5.3e-31 139.0 293 35.5
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 7.0e-31 138.7 303 34.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 7.0e-31 138.7 298 34.9
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 5.9e-30 135.6 300 35.7
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 7.7e-30 135.2 289 35.6
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.3e-29 134.4 302 33.8
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.7e-29 134.0 281 37.0
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.2e-29 133.7 307 33.6
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.9e-29 133.3 313 33.9
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 3.8e-29 132.9 317 34.1
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.1e-28 131.3 312 34.0
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 2.5e-28 130.2 294 36.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 4.2e-28 129.4 306 33.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.6e-27 127.5 329 34.0
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 3.6e-27 126.3 312 31.1
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 6.1e-27 125.6 291 32.0
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 8.0e-27 125.2 298 32.6
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.0e-26 124.8 307 33.2
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.0e-26 124.8 304 36.5
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.0e-26 124.8 308 34.7
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-26 124.0 304 35.2
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.8e-26 124.0 305 35.1
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.3e-26 123.6 282 33.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 2.3e-26 123.6 302 34.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 4.0e-26 122.9 308 34.4
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 4.0e-26 122.9 313 34.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 5.2e-26 122.5 308 32.1
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 5.2e-26 122.5 294 36.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.8e-26 122.1 250 39.2
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 8.8e-26 121.7 200 42.0
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 8.8e-26 121.7 315 34.3
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.5e-25 120.9 297 33.0
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.0e-25 120.6 296 33.4
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 2.0e-25 120.6 302 34.4
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.4e-25 119.8 315 34.3
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 4.4e-25 119.4 296 31.8
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.7e-25 119.0 288 33.7
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 5.7e-25 119.0 296 34.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 7.5e-25 118.6 277 33.2
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 9.8e-25 118.2 301 33.9
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 9.8e-25 118.2 301 34.9
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.7e-24 116.3 303 33.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.7e-24 116.3 313 31.9
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 3.7e-24 116.3 307 31.9
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.8e-24 115.9 318 32.7
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 6.3e-24 115.5 317 32.2
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 8.3e-24 115.2 300 32.3
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.1e-23 114.8 312 33.0
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.1e-23 114.8 297 33.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.4e-23 114.4 299 35.1
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.8e-23 114.0 305 33.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-23 114.0 302 30.5
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.4e-23 113.6 280 34.3
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.4e-23 113.6 302 30.5
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 5.4e-23 112.5 286 33.2
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 5.4e-23 112.5 301 34.2
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 7.0e-23 112.1 300 29.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 7.0e-23 112.1 255 34.9
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 7.0e-23 112.1 194 41.2
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.2e-22 111.3 305 29.8
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.6e-22 110.9 309 33.0
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.6e-22 110.9 293 34.5
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 1.6e-22 110.9 281 32.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 2.0e-22 110.5 297 33.3
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.0e-22 110.5 295 33.2
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.0e-22 110.5 294 33.7
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 2.0e-22 110.5 228 37.3
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.0e-22 110.5 293 31.1
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 5.9e-22 109.0 286 33.9
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.0e-21 108.2 283 32.2
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.3e-21 107.8 319 32.0
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.9e-21 106.7 255 34.1
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 2.9e-21 106.7 305 30.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.9e-21 106.7 219 34.7
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 6.5e-21 105.5 291 32.6
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 6.5e-21 105.5 219 37.9
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 8.5e-21 105.1 297 32.3
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-20 104.0 95 57.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.9e-20 104.0 290 31.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 3.2e-20 103.2 278 29.9
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 5.5e-20 102.4 197 38.1
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 9.5e-20 101.7 291 33.7
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.6e-19 100.9 201 32.8
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.6e-19 100.9 314 28.7
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 2.1e-19 100.5 104 50.0
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.1e-19 100.5 167 41.3
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.6e-19 99.8 304 31.2
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.0e-18 98.2 276 30.8
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.0e-17 94.0 291 28.9
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.0e-17 94.0 178 37.6
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 4.4e-17 92.8 200 35.5
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 2.2e-16 90.5 292 30.5
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 3.7e-16 89.7 193 32.6
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 6.3e-16 89.0 195 34.9
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 8.3e-16 88.6 286 29.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.3e-16 88.6 303 28.7
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.4e-15 87.8 98 51.0
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 4.1e-15 86.3 270 30.7
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 7.0e-15 85.5 306 26.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.2e-14 84.7 283 28.6
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 2.0e-14 84.0 270 30.0
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.5e-14 83.2 300 28.3
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 3.5e-14 83.2 110 43.6
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.0e-13 79.3 266 30.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 8.6e-13 78.6 182 34.1
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.5e-12 77.8 102 43.1
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.9e-12 77.4 247 31.2
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 3.3e-12 76.6 272 30.9
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.3e-12 76.6 261 26.1
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 7.3e-12 75.5 297 28.3
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 9.5e-12 75.1 106 42.5
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.6e-11 74.3 170 31.2
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 4.7e-11 72.8 80 51.2
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.0e-10 71.6 248 32.3
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.8e-10 70.9 270 29.3
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-10 70.9 154 29.9
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 4.0e-10 69.7 296 26.0
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 6.8e-10 68.9 106 41.5
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 8.9e-10 68.6 287 25.1
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.4e-09 66.2 154 29.2
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.3e-08 64.7 218 29.4
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 8.3e-08 62.0 253 29.6
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 3.2e-07 60.1 134 32.8
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 5.9e-06 55.8 38 63.2


User provided reference genes

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