Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-44 183.0 91 100.0
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 1.3e-29 132.9 107 70.1
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 2.8e-29 131.7 107 68.2
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.4e-28 129.4 107 69.2
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 1.8e-28 129.0 107 67.3
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 5.3e-28 127.5 111 66.7
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.2e-27 126.3 111 64.0
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.5e-27 125.9 111 64.9
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 2.6e-27 125.2 111 64.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.4e-27 124.8 109 65.1
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 4.5e-27 124.4 106 65.1
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 1.7e-26 122.5 108 64.8
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.7e-26 122.5 109 66.1
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.7e-26 122.5 112 66.1
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 2.2e-26 122.1 113 64.6
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 2.2e-26 122.1 113 64.6
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 2.2e-26 122.1 110 65.5
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 4.9e-26 120.9 109 65.1
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 6.5e-26 120.6 100 71.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-25 119.4 111 62.2
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 3.2e-25 118.2 113 61.9
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 3.2e-25 118.2 111 61.3
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 7.1e-25 117.1 102 66.7
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 7.1e-25 117.1 102 66.7
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 3.5e-24 114.8 109 59.6
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 9.0e-20 100.1 86 66.3
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 3.2e-17 91.7 108 52.8
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 4.8e-13 77.8 80 52.5
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 2.2e-10 68.9 106 43.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 2.2e-10 68.9 95 47.4
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.9e-09 65.9 105 42.9
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.2e-09 65.1 101 43.6
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 3.2e-09 65.1 98 43.9
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 7.2e-09 63.9 108 38.0
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.6e-08 62.8 70 50.0
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 1.6e-08 62.8 109 43.1
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 2.1e-08 62.4 101 46.5
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 3.6e-08 61.6 91 47.3
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 3.6e-08 61.6 110 40.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 4.7e-08 61.2 103 42.7
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 6.1e-08 60.8 111 42.3
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 7.9e-08 60.5 108 38.9
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 7.9e-08 60.5 98 42.9
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.0e-07 60.1 103 40.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 1.4e-07 59.7 94 37.2
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 3.9e-07 58.2 103 44.7
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 3.9e-07 58.2 110 36.4
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 6.7e-07 57.4 97 40.2
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.5e-06 56.2 100 40.0
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.5e-06 56.2 100 36.0
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 2.0e-06 55.8 96 38.5
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 2.0e-06 55.8 105 39.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.6e-06 55.5 97 38.1
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 2.6e-06 55.5 94 41.5
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 9.7e-06 53.5 91 35.2
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 9.7e-06 53.5 110 39.1


User provided reference genes

Program Settings