Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.0e-78 295.0 143 100.0
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 6.1e-39 164.5 128 71.1
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 5.2e-38 161.4 128 68.8
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.0e-37 159.5 128 68.8
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 8.3e-36 154.1 128 68.0
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 4.1e-35 151.8 129 65.1
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 9.2e-35 150.6 128 67.2
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.6e-34 149.8 128 68.0
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 1.3e-33 146.7 128 67.2
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 1.1e-32 143.7 128 66.4
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 2.5e-32 142.5 128 64.1
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 2.5e-32 142.5 128 64.1
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 2.5e-32 142.5 128 64.1
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 2.5e-32 142.5 128 64.1
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 2.5e-32 142.5 128 64.1
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 9.5e-32 140.6 122 61.5
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 2.1e-31 139.4 114 62.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 8.0e-31 137.5 114 62.3
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.5e-29 133.3 120 67.5
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.6e-29 132.5 113 61.1
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.6e-29 132.5 112 61.6
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 8.3e-28 127.5 106 61.3
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.1e-27 127.1 112 60.7
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 3.2e-27 125.6 122 58.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.2e-26 123.6 108 62.0
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 2.7e-26 122.5 113 56.6
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 4.6e-26 121.7 111 57.7
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 7.8e-26 120.9 115 57.4
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 7.8e-26 120.9 108 59.3
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 7.8e-26 120.9 111 60.4
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 1.7e-25 119.8 101 61.4
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.3e-25 119.4 113 57.5
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.0e-25 119.0 101 60.4
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 6.6e-25 117.9 100 60.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 1.1e-24 117.1 102 63.7
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 4.3e-24 115.2 113 56.6
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.6e-24 114.8 115 54.8
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 7.3e-24 114.4 101 59.4
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 9.5e-24 114.0 90 65.6
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.6e-23 113.2 115 54.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.6e-23 113.2 114 56.1
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.1e-23 112.8 147 43.5
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 3.6e-23 112.1 101 57.4
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 3.6e-23 112.1 98 62.2
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 4.7e-23 111.7 90 62.2
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 6.2e-23 111.3 133 50.4
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 6.2e-23 111.3 112 54.5
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 8.0e-23 110.9 82 67.1
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.4e-22 110.2 95 61.1
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 1.8e-22 109.8 110 54.5
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 4.0e-22 108.6 95 61.1
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 5.2e-22 108.2 113 54.0
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 6.8e-22 107.8 113 54.0
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 6.8e-22 107.8 83 67.5
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.2e-21 107.1 106 52.8
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.2e-21 107.1 152 46.1
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.5e-21 106.7 83 66.3
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 2.0e-21 106.3 89 57.3
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.0e-21 106.3 113 54.9
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 2.6e-21 105.9 112 53.6
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 3.4e-21 105.5 122 50.0
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 3.4e-21 105.5 91 65.9
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 5.8e-21 104.8 94 57.4
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 5.8e-21 104.8 101 57.4
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 7.5e-21 104.4 108 56.5
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 9.8e-21 104.0 135 46.7
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.3e-20 103.6 82 64.6
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.3e-20 103.6 81 67.9
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 1.3e-20 103.6 87 59.8
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.7e-20 103.2 113 51.3
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.7e-20 103.2 82 63.4
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.7e-20 103.2 101 56.4
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.2e-20 102.8 113 48.7
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 2.9e-20 102.4 101 55.4
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.7e-20 102.1 89 61.8
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.7e-20 102.1 116 51.7
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.7e-20 102.1 107 53.3
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.7e-20 102.1 129 47.3
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 3.7e-20 102.1 112 51.8
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.7e-20 102.1 112 50.9
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 4.9e-20 101.7 129 46.5
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 4.9e-20 101.7 113 50.4
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 6.4e-20 101.3 106 52.8
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 6.4e-20 101.3 81 65.4
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 8.3e-20 100.9 113 51.3
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 8.3e-20 100.9 129 46.5
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 8.3e-20 100.9 112 51.8
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 8.3e-20 100.9 89 60.7
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-19 100.5 126 49.2
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.9e-19 99.8 113 50.4
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.9e-19 99.8 128 47.7
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.4e-19 99.4 113 51.3
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 3.2e-19 99.0 125 47.2
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 3.2e-19 99.0 90 60.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 3.2e-19 99.0 97 56.7
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 3.2e-19 99.0 101 53.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.4e-19 98.2 111 52.3
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.2e-19 97.4 113 49.6
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.2e-18 97.1 148 39.2
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.2e-18 97.1 113 49.6
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.2e-18 97.1 100 54.0
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 2.7e-18 95.9 94 59.6
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 4.6e-18 95.1 80 68.8
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 4.6e-18 95.1 80 68.8
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.3e-17 93.6 89 57.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.7e-17 93.2 99 50.5
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 2.3e-17 92.8 113 46.0
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 3.9e-17 92.0 91 51.6
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.9e-16 89.7 86 57.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.9e-16 89.7 85 56.5
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.5e-16 89.4 81 59.3
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 5.6e-16 88.2 67 71.6
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 7.3e-16 87.8 124 42.7
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 9.5e-16 87.4 112 46.4
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.2e-15 87.0 120 43.3
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.6e-15 86.7 90 55.6
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 2.1e-15 86.3 78 55.1
BolC2t06845H Brassica oleracea HOM05D005516 ORTHO05D006713 2.8e-15 85.9 59 76.3
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.8e-15 85.9 83 54.2
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.7e-15 85.1 89 55.1
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.1e-14 84.0 123 40.7
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.9e-12 75.1 53 64.2
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 1.4e-11 73.6 84 48.8
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.2e-10 70.5 51 62.7
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 2.7e-10 69.3 100 40.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 6.0e-10 68.2 51 56.9
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 3.9e-09 65.5 57 59.6
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 5.6e-08 61.6 76 48.7
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.1e-07 57.8 53 54.7
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.1e-07 57.8 53 54.7
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.1e-06 57.4 68 52.9
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.8e-06 56.6 61 52.5


User provided reference genes

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