Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.6e-289 998.0 520 100.0
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 3.2e-239 831.6 530 86.2
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 1.2e-238 829.7 508 88.6
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 2.0e-236 822.4 512 88.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 1.7e-235 819.3 513 87.5
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.0e-232 810.1 520 86.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 1.9e-218 762.7 502 79.9
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 5.2e-213 744.6 507 79.3
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 1.9e-191 672.9 511 73.8
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 6.9e-189 664.5 509 72.9
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 6.4e-187 657.9 563 67.3
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 2.9e-179 632.5 505 69.9
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 1.6e-153 547.0 508 60.2
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 2.3e-115 420.2 533 46.5
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 1.4e-112 411.0 519 45.1
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 2.6e-111 406.8 529 46.1
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 1.7e-110 404.1 522 46.4
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.8e-109 400.6 519 45.3
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 3.2e-109 399.8 522 44.6
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 5.9e-108 395.6 523 45.1
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.0e-107 394.8 528 44.1
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 1.3e-107 394.4 525 44.4
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 3.0e-107 393.3 515 45.0
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 1.8e-104 384.0 533 43.7
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 9.8e-103 378.3 544 43.2
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.2e-101 373.2 487 45.8
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.6e-100 370.9 517 43.3
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 2.0e-100 370.5 528 42.8
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.0e-99 368.2 479 45.1
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 6.6e-99 365.5 514 44.0
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 3.3e-98 363.2 525 42.7
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 5.6e-98 362.5 521 42.8
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.0e-96 356.3 513 43.7
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 6.8e-96 355.5 518 44.4
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 3.4e-95 353.2 525 45.0
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 6.4e-94 349.0 522 44.1
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 6.4e-94 349.0 515 43.3
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 3.2e-93 346.7 526 42.0
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 3.2e-93 346.7 520 42.7
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 7.1e-93 345.5 518 43.6
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 9.2e-93 345.1 526 42.0
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 2.1e-92 344.0 473 44.4
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 2.1e-92 344.0 514 43.4
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 2.7e-92 343.6 525 42.9
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.7e-91 340.9 522 42.0
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.0e-91 340.1 520 42.3
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 3.9e-91 339.7 527 43.5
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 1.5e-90 337.8 522 40.0
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 3.6e-89 333.2 515 42.9
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 1.1e-88 331.6 518 39.4
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 1.4e-88 331.3 525 40.4
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.8e-88 330.9 510 40.4
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 2.3e-88 330.5 518 42.7
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 3.4e-87 326.6 514 39.1
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 4.4e-87 326.2 513 41.9
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 7.6e-87 325.5 653 36.0
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 3.7e-86 323.2 475 42.3
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 4.9e-86 322.8 524 42.6
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 5.4e-85 319.3 513 41.3
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 1.0e-83 315.1 520 40.2
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 6.8e-80 302.4 512 41.2
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 3.4e-79 300.1 506 40.9
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 7.6e-79 298.9 460 39.8
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 9.9e-79 298.5 514 37.9
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 1.3e-78 298.1 483 39.3
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 2.9e-78 297.0 517 38.1
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 3.8e-78 296.6 355 48.7
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 2.1e-76 290.8 510 36.9
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 2.1e-76 290.8 511 37.8
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.0e-75 288.5 475 41.7
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 1.5e-74 284.6 422 40.5
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 4.3e-74 283.1 524 38.5
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 3.6e-73 280.0 532 35.7
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.4e-69 267.3 457 41.1
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.3e-67 261.5 508 35.8
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 6.6e-67 259.2 519 35.5
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 8.7e-67 258.8 270 63.3
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 1.1e-64 251.9 533 36.4
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.8e-64 251.1 457 40.3
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 5.3e-64 249.6 510 36.5
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 8.4e-62 242.3 409 40.8
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 6.0e-60 236.1 385 40.0
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 3.0e-59 233.8 417 37.4
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 3.9e-59 233.4 236 53.4
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 5.1e-59 233.0 461 36.4
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.4e-56 224.9 377 38.7
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 7.6e-55 219.2 417 36.9
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 4.9e-54 216.5 271 48.0
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 4.9e-54 216.5 525 30.9
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 1.8e-51 208.0 292 44.9
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 8.2e-49 199.1 141 83.0
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 5.5e-45 186.4 133 83.5
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 8.7e-43 179.1 224 45.5
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 2.8e-41 174.1 145 68.3
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 2.8e-41 174.1 145 68.3
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 2.0e-39 167.9 351 35.6
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 5.9e-39 166.4 507 28.6
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 1.3e-38 165.2 141 66.0
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 1.3e-38 165.2 141 66.0
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 1.3e-38 165.2 141 66.0
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 4.2e-37 160.2 449 29.6
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 5.1e-35 153.3 330 35.5
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.4e-32 145.2 144 54.2
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 1.4e-32 145.2 160 48.8
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 2.4e-32 144.4 293 34.8
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 4.1e-32 143.7 141 51.8
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 9.1e-32 142.5 316 34.8
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 3.8e-30 137.1 139 57.6
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 8.5e-30 136.0 130 51.5
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 7.2e-29 132.9 291 36.1
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 4.7e-28 130.2 113 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 2.4e-24 117.9 485 26.2
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 2.0e-23 114.8 251 33.1
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 2.6e-23 114.4 268 29.9
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 1.0e-22 112.5 106 49.1
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 5.5e-21 106.7 266 35.7
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 5.5e-21 106.7 132 47.0
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.0e-18 98.2 135 40.0
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 9.4e-13 79.3 143 35.0
BcaB01g04934 Brassica carinata HOM05D005725 ORTHO05D093362 8.8e-11 72.8 70 58.6
BraA09t40805Z Brassica rapa HOM05D005725 ORTHO05D007531 1.2e-10 72.4 32 100.0
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.4e-08 65.5 143 30.8
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 7.7e-07 59.7 64 45.3
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 2.2e-06 58.2 182 28.6
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 5.0e-06 57.0 92 41.3


User provided reference genes

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