Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23261 Brassica carinata HOM05D009029 ORTHO05D009596 2.2e-96 355.5 165 100.0
BcaC03g18552 Brassica carinata HOM05D009029 ORTHO05D009596 2.2e-85 318.9 166 89.8
A02p04140 Brassica napus HOM05D009029 ORTHO05D009596 2.2e-85 318.9 166 89.8
C02p08990 Brassica napus HOM05D009029 ORTHO05D009596 2.2e-85 318.9 166 89.8
BolC2t06808H Brassica oleracea HOM05D009029 ORTHO05D009596 2.2e-85 318.9 166 89.8
BraA02t05377Z Brassica rapa HOM05D009029 ORTHO05D009596 2.2e-85 318.9 166 89.8
BcaB08g36781 Brassica carinata HOM05D009029 ORTHO05D009596 1.4e-74 283.1 166 81.3
Sp6g26880 Schrenkiella parvula HOM05D009029 ORTHO05D009596 1.2e-70 270.0 157 79.6
CARHR195870 Cardamine hirsuta HOM05D009029 ORTHO05D009596 3.8e-69 265.0 168 78.0
Thhalv10014860m.g Eutrema salsugineum HOM05D009029 ORTHO05D009596 2.5e-68 262.3 172 75.0
Carub.0006s1555 Capsella rubella HOM05D009029 ORTHO05D009596 3.0e-66 255.4 168 73.2
AT5G17340 Arabidopsis thaliana HOM05D009029 ORTHO05D009596 2.2e-64 249.2 167 75.4
AL6G28410 Arabidopsis lyrata HOM05D009029 ORTHO05D009596 2.9e-64 248.8 167 74.9
BcaC04g18801 Brassica carinata HOM05D009029 ORTHO05D009596 3.4e-57 225.3 157 71.3
C09p59800 Brassica napus HOM05D009029 ORTHO05D009596 2.3e-50 202.6 166 63.3
Carub.0006s1554 Capsella rubella HOM05D009029 ORTHO05D009596 1.9e-44 183.0 165 59.4
A10p22070 Brassica napus HOM05D009029 ORTHO05D009596 1.1e-36 157.1 164 52.4
BraA10t44266Z Brassica rapa HOM05D009029 ORTHO05D009596 1.6e-35 153.3 165 52.7
C09p59840 Brassica napus HOM05D009029 ORTHO05D009596 2.8e-35 152.5 163 52.1
CARHR195880 Cardamine hirsuta HOM05D009029 ORTHO05D009596 2.8e-35 152.5 108 66.7
BolC1t01146H Brassica oleracea HOM05D009029 ORTHO05D009596 8.1e-35 151.0 164 51.8
BraA10t44265Z Brassica rapa HOM05D009029 ORTHO05D009596 1.4e-34 150.2 81 84.0
C09p59860 Brassica napus HOM05D009029 ORTHO05D009596 2.4e-34 149.4 164 51.2
BcaC09g51570 Brassica carinata HOM05D009029 ORTHO05D009596 3.1e-34 149.1 161 51.6
BcaB08g36782 Brassica carinata HOM05D009029 ORTHO05D009596 1.2e-33 147.1 164 51.8
BolC9t58822H Brassica oleracea HOM05D009029 ORTHO05D009596 6.0e-30 134.8 149 51.0
BcaC04g18803 Brassica carinata HOM05D009029 ORTHO05D009596 1.3e-29 133.7 164 50.0
THA.LOC104827231 Tarenaya hassleriana HOM05D009029 ORTHO05D009596 5.6e-28 128.3 165 43.6
THA.LOC104820858 Tarenaya hassleriana HOM05D009029 ORTHO05D009596 7.1e-23 111.3 160 38.1
Aa31LG11G12340 Aethionema arabicum HOM05D009029 ORTHO05D009596 2.1e-19 99.8 172 37.2
SpUn0004_0070 Schrenkiella parvula HOM05D009160 ORTHO05D009596 2.8e-19 99.4 168 37.5
SpUn0066_0020 Schrenkiella parvula HOM05D009160 ORTHO05D009596 2.8e-19 99.4 168 37.5
C09p59830 Brassica napus HOM05D009029 ORTHO05D009596 8.1e-19 97.8 114 54.4
THA.LOC104821158 Tarenaya hassleriana HOM05D009029 ORTHO05D009596 1.5e-17 93.6 163 36.2
Sp6g26890 Schrenkiella parvula HOM05D009160 ORTHO05D009596 2.2e-16 89.7 170 34.1
Aa31LG11G12230 Aethionema arabicum HOM05D009029 ORTHO05D009596 8.4e-16 87.8 167 35.9
Thhalv10015780m.g Eutrema salsugineum HOM05D009160 ORTHO05D009596 3.9e-13 79.0 169 33.7
Prupe.2G194700 Prunus persica HOM05D009029 ORTHO05D009596 2.1e-11 73.2 102 37.3
BolC3t13456H Brassica oleracea HOM05D009160 ORTHO05D009596 1.8e-10 70.1 160 31.2
MD01G1086400 Malus domestica HOM05D009029 ORTHO05D009596 2.4e-10 69.7 104 39.4
C03p09680 Brassica napus HOM05D009160 ORTHO05D009596 1.2e-09 67.4 160 30.6
BcaB01g05195 Brassica carinata HOM05D009160 ORTHO05D009596 1.5e-09 67.0 160 30.6
Duzib093G1752 Durio zibethinus HOM05D020091 ORTHO05D009596 4.5e-09 65.5 126 34.9
BcaB01g04931 Brassica carinata HOM05D009160 ORTHO05D009596 7.6e-09 64.7 166 31.9
BcaB01g05201 Brassica carinata HOM05D009160 ORTHO05D009596 1.3e-08 63.9 165 30.3
A03p08340 Brassica napus HOM05D009160 ORTHO05D009596 1.3e-08 63.9 165 30.3
BolC3t13462H Brassica oleracea HOM05D009160 ORTHO05D009596 1.3e-08 63.9 165 30.3
BcaB01g04930 Brassica carinata HOM05D009160 ORTHO05D009596 1.7e-08 63.5 166 31.3
A03p08300 Brassica napus HOM05D009160 ORTHO05D009596 1.7e-08 63.5 166 30.7
BolC3t13454H Brassica oleracea HOM05D009160 ORTHO05D009596 1.7e-08 63.5 165 30.3
SpUn0004_0040 Schrenkiella parvula HOM05D009029 ORTHO05D009596 2.2e-08 63.2 91 48.4
C03p09720 Brassica napus HOM05D009160 ORTHO05D009596 2.9e-08 62.8 165 30.3
Sp3g02310 Schrenkiella parvula HOM05D012509 ORTHO05D009596 2.9e-08 62.8 64 42.2
BcaB01g04927 Brassica carinata HOM05D009160 ORTHO05D009596 3.8e-08 62.4 166 31.3
BcaB01g04928 Brassica carinata HOM05D009160 ORTHO05D009596 4.9e-08 62.0 166 31.3
BraA03t10150Z Brassica rapa HOM05D009160 ORTHO05D009596 4.9e-08 62.0 159 28.9
BcaB01g04929 Brassica carinata HOM05D009160 ORTHO05D009596 6.5e-08 61.6 166 31.3
Thhalv10015886m.g Eutrema salsugineum HOM05D009160 ORTHO05D009596 8.4e-08 61.2 165 32.7
BcaB01g05200 Brassica carinata HOM05D009160 ORTHO05D009596 1.1e-07 60.8 166 33.1
BolC3t13461H Brassica oleracea HOM05D009160 ORTHO05D009596 1.1e-07 60.8 166 33.1
BcaB01g05193 Brassica carinata HOM05D009160 ORTHO05D009596 1.4e-07 60.5 166 32.5
A03p08310 Brassica napus HOM05D009160 ORTHO05D009596 1.4e-07 60.5 160 28.8
C03p09670 Brassica napus HOM05D009160 ORTHO05D009596 1.4e-07 60.5 166 32.5
BolC3t13455H Brassica oleracea HOM05D009160 ORTHO05D009596 1.4e-07 60.5 166 32.5
BraA03t10149Z Brassica rapa HOM05D009160 ORTHO05D009596 1.4e-07 60.5 165 29.7
C03p09690 Brassica napus HOM05D009160 ORTHO05D009596 1.9e-07 60.1 165 30.3
C03p09710 Brassica napus HOM05D009160 ORTHO05D009596 1.9e-07 60.1 166 33.1
BraA03t10152Z Brassica rapa HOM05D009160 ORTHO05D009596 1.9e-07 60.1 165 30.3
C03p09660 Brassica napus HOM05D009160 ORTHO05D009596 3.2e-07 59.3 166 28.9
Prupe.2G194800 Prunus persica HOM05D016369 ORTHO05D009596 3.2e-07 59.3 97 36.1
AL3G12880 Arabidopsis lyrata HOM05D012509 ORTHO05D009596 4.2e-07 58.9 62 40.3
BcaB01g04933 Brassica carinata HOM05D009160 ORTHO05D009596 5.5e-07 58.5 166 31.3
BcaC04g18805 Brassica carinata HOM05D009029 ORTHO05D009596 5.5e-07 58.5 32 71.9
BcaC01g04403 Brassica carinata HOM05D012509 ORTHO05D009596 7.1e-07 58.2 64 39.1
BcaC01g04408 Brassica carinata HOM05D012509 ORTHO05D009596 7.1e-07 58.2 64 39.1
A03p33250 Brassica napus HOM05D012509 ORTHO05D009596 7.1e-07 58.2 64 39.1
BolC3t13458H Brassica oleracea HOM05D009160 ORTHO05D009596 7.1e-07 58.2 165 32.7
BolC3t16315H Brassica oleracea HOM05D012509 ORTHO05D009596 7.1e-07 58.2 64 39.1
BraA03t12497Z Brassica rapa HOM05D012509 ORTHO05D009596 7.1e-07 58.2 64 39.1
A03p08320 Brassica napus HOM05D009160 ORTHO05D009596 9.3e-07 57.8 99 36.4
BcaB04g19371 Brassica carinata HOM05D012509 ORTHO05D009596 1.2e-06 57.4 64 39.1
Carub.0003s0243 Capsella rubella HOM05D012509 ORTHO05D009596 2.1e-06 56.6 63 36.5
AT3G03272 Arabidopsis thaliana HOM05D012509 ORTHO05D009596 2.7e-06 56.2 62 38.7
CARHR077300 Cardamine hirsuta HOM05D012509 ORTHO05D009596 2.7e-06 56.2 62 38.7


User provided reference genes

Program Settings