Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-61 237.3 116 100.0
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 9.3e-54 213.4 116 90.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 9.3e-54 213.4 116 90.5
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.8e-50 201.1 116 82.8
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-50 200.7 116 81.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 6.3e-50 200.7 116 81.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 6.3e-50 200.7 116 81.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.4e-49 199.5 116 81.0
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.4e-49 199.5 116 82.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-49 198.4 116 81.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.9e-49 197.2 116 80.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-46 189.9 110 81.8
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-46 189.9 110 81.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.0e-44 183.3 121 77.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-42 175.6 102 87.3
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-42 175.6 102 87.3
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 8.2e-42 173.7 102 86.3
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 4.5e-40 167.9 119 73.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-39 166.0 143 62.9
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 8.5e-39 163.7 116 73.3
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-38 163.3 116 73.3
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-35 153.3 127 63.8
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-35 152.1 177 50.3
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-34 149.1 134 59.7
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 8.2e-34 147.1 151 56.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.9e-32 141.0 123 58.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.7e-26 121.7 119 55.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.1e-25 118.2 122 54.1
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-24 116.7 116 55.2
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-24 115.9 117 55.6
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-23 113.2 121 49.6
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.5e-23 110.5 121 54.5
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.4e-22 107.1 117 52.1
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 2.7e-21 105.5 119 55.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.8e-20 102.8 117 48.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.0e-20 101.7 116 50.9
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.0e-20 101.7 117 53.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.0e-20 101.7 117 53.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.0e-20 101.7 117 53.8
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 6.8e-20 100.9 133 42.1
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.2e-19 100.1 138 44.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 4.4e-19 98.2 129 43.4
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.3e-18 94.4 143 41.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 6.3e-18 94.4 143 41.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-17 93.6 138 41.3
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.4e-17 93.2 130 39.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.4e-17 93.2 136 43.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.4e-17 93.2 140 42.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.8e-17 92.8 128 43.8
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.4e-17 92.4 140 40.7
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 2.4e-17 92.4 123 43.1
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.4e-17 92.4 130 44.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.1e-17 92.0 133 43.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.1e-17 91.7 128 41.4
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 5.3e-17 91.3 140 40.7
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.3e-17 91.3 143 40.6
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 5.3e-17 91.3 140 44.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.3e-17 91.3 130 44.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.6e-16 89.7 135 41.5
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.6e-16 89.7 124 45.2
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.6e-16 89.7 139 42.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.7e-16 89.0 135 40.7
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 4.5e-16 88.2 125 42.4
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 4.5e-16 88.2 125 41.6
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 5.9e-16 87.8 147 40.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.9e-16 87.8 130 40.0
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 7.7e-16 87.4 137 42.3
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.7e-16 87.4 129 40.3
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 7.7e-16 87.4 135 43.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.0e-15 87.0 131 42.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.0e-15 87.0 134 42.5
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.3e-15 86.7 124 45.2
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.7e-15 86.3 130 42.3
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.7e-15 86.3 138 39.1
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.7e-15 86.3 125 41.6
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.7e-15 86.3 130 41.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.7e-15 86.3 130 40.8
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.7e-15 86.3 140 42.1
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.2e-15 85.9 147 36.7
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.2e-15 85.9 133 41.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.9e-15 85.5 119 40.3
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.9e-15 85.5 135 40.0
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.8e-15 85.1 134 38.1
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.8e-15 85.1 130 40.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 6.5e-15 84.3 130 39.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.5e-15 84.3 131 42.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.5e-15 84.0 134 41.8
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 8.5e-15 84.0 138 40.6
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 8.5e-15 84.0 138 40.6
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 8.5e-15 84.0 129 40.3
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-14 83.6 130 40.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-14 83.6 136 39.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.5e-14 83.2 134 41.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-14 83.2 134 41.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.5e-14 82.4 134 41.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 2.5e-14 82.4 137 40.9
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.5e-14 82.4 133 39.1
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 3.2e-14 82.0 118 43.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 4.2e-14 81.6 140 40.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.2e-14 81.6 134 41.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.2e-14 81.6 122 42.6
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.2e-14 81.6 134 41.0
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.5e-14 81.3 129 37.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.2e-14 80.9 134 40.3
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-14 80.9 134 40.3
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-14 80.9 134 40.3
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.2e-14 80.9 134 40.3
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 42.7
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.4e-14 80.5 134 41.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.4e-14 80.5 131 39.7
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-13 80.1 134 40.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-13 80.1 134 40.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-13 80.1 134 40.3
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-13 80.1 134 40.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-13 80.1 131 42.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-13 79.3 131 40.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.1e-13 79.3 124 41.1
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-13 79.0 131 39.7
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-13 77.8 134 39.6
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-13 77.8 134 39.6
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-13 77.8 134 38.8
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 6.1e-13 77.8 134 38.8
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 6.1e-13 77.8 133 37.6
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 6.1e-13 77.8 116 42.2
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 8.0e-13 77.4 133 39.1
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 8.0e-13 77.4 133 38.3
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 8.0e-13 77.4 133 40.6
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-12 77.0 125 40.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-12 77.0 131 39.7
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-12 77.0 131 39.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.0e-12 77.0 131 39.7
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.0e-12 77.0 104 40.4
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-12 77.0 128 35.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-12 76.6 116 41.4
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-12 76.3 134 39.6
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.8e-12 76.3 147 35.4
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.3e-12 75.9 132 41.7
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 4.0e-12 75.1 134 38.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 4.0e-12 75.1 134 38.1
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 4.0e-12 75.1 130 38.5
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 4.0e-12 75.1 136 37.5
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.8e-12 74.3 129 40.3
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.6e-11 72.4 127 37.8
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.4e-11 72.0 132 40.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-10 70.1 132 39.4
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.3e-10 70.1 145 32.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.2e-10 69.3 132 39.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.7e-10 68.6 120 39.2
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.8e-10 68.2 119 37.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 6.3e-10 67.8 120 36.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.3e-10 67.4 118 33.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.4e-09 66.6 127 35.4
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.4e-09 66.6 127 31.5
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.8e-09 66.2 113 38.9
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.1e-09 65.5 118 33.1
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 4.1e-09 65.1 116 37.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.4e-09 64.7 115 35.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.0e-09 64.3 119 33.6
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 9.1e-09 63.9 111 37.8
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 9.1e-09 63.9 118 35.6
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.6e-08 63.2 60 50.0
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.6e-08 63.2 122 35.2
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 3.5e-08 62.0 75 46.7
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 5.9e-08 61.2 109 38.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.7e-08 60.8 100 36.0
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 7.7e-08 60.8 116 35.3
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.0e-07 60.5 121 33.9
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.7e-07 59.7 119 34.5
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.3e-07 59.3 66 47.0
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 5.0e-07 58.2 111 37.8
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 5.0e-07 58.2 109 34.9
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.6e-07 57.4 124 33.9
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 8.6e-07 57.4 114 33.3
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 2.5e-06 55.8 127 30.7
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.2e-06 55.1 122 33.6
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.2e-06 55.1 111 28.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.2e-06 54.3 112 31.2


User provided reference genes

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