Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 4.8e-123 444.5 224 100.0
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-69 267.3 170 79.4
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 4.0e-69 265.4 170 78.8
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 6.8e-69 264.6 170 78.8
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.0e-68 263.1 170 79.4
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 4.4e-68 261.9 170 78.2
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 4.4e-68 261.9 170 77.6
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 5.8e-68 261.5 199 69.3
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 1.1e-66 257.3 170 77.1
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 1.1e-66 257.3 170 77.1
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 2.4e-66 256.1 170 76.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 3.2e-66 255.8 170 76.5
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.4e-66 255.0 170 75.3
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 7.1e-66 254.6 170 75.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.6e-65 253.4 170 75.9
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 3.5e-65 252.3 170 75.9
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 4.6e-65 251.9 170 75.3
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.7e-64 250.0 170 75.3
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.2e-59 233.0 170 67.6
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.1e-55 220.7 170 61.2
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.1e-55 220.7 170 62.4
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 2.5e-55 219.5 170 61.8
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.5e-55 219.5 170 61.2
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 3.3e-55 219.2 170 60.0
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 4.3e-55 218.8 170 60.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.2e-54 217.2 170 60.6
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.6e-54 216.9 170 62.4
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 2.8e-54 216.1 170 61.2
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 4.7e-54 215.3 170 61.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.4e-53 213.8 170 58.2
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.4e-53 213.8 170 60.0
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.4e-53 213.0 170 57.1
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 3.1e-53 212.6 170 58.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 3.1e-53 212.6 170 59.4
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 4.0e-53 212.2 170 59.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 5.2e-53 211.8 170 59.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 5.2e-53 211.8 170 60.0
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 6.8e-53 211.5 170 57.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 8.9e-53 211.1 170 57.6
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-52 210.7 170 60.0
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.2e-52 210.7 170 58.2
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 2.6e-52 209.5 170 58.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.6e-52 209.5 170 57.1
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 5.8e-52 208.4 170 59.4
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.3e-51 207.2 170 60.6
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.3e-51 207.2 170 57.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.2e-51 206.5 170 56.5
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.9e-51 206.1 170 59.4
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 3.8e-51 205.7 170 56.5
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.4e-51 204.5 170 58.2
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 8.4e-51 204.5 201 52.2
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 8.4e-51 204.5 170 56.5
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.9e-50 203.4 174 56.3
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 3.2e-50 202.6 169 58.0
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 7.1e-50 201.4 170 56.5
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 9.3e-50 201.1 170 53.5
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 9.3e-50 201.1 170 57.6
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.2e-49 200.7 170 57.1
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.2e-49 200.7 170 55.9
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.6e-49 200.3 170 53.5
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.6e-49 200.3 170 55.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 2.1e-49 199.9 170 54.1
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 2.1e-49 199.9 170 54.1
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.1e-49 199.9 170 57.1
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 2.1e-49 199.9 170 55.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-49 199.9 172 57.0
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 3.5e-49 199.1 170 56.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 4.6e-49 198.7 170 55.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 7.8e-49 198.0 172 56.4
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.3e-48 197.2 170 52.4
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.3e-48 197.2 170 54.7
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.3e-48 197.2 170 54.1
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 1.3e-48 197.2 170 55.9
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.7e-48 196.8 170 55.3
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.3e-48 196.4 171 53.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.0e-48 196.1 170 55.3
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 3.0e-48 196.1 171 53.2
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 5.1e-48 195.3 170 54.7
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 5.1e-48 195.3 171 53.2
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 8.7e-48 194.5 171 53.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 8.7e-48 194.5 170 55.3
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 8.7e-48 194.5 170 54.7
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.1e-47 194.1 170 54.1
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.1e-47 194.1 171 52.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 3.3e-47 192.6 170 52.4
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.6e-47 191.8 170 54.7
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 5.6e-47 191.8 170 52.9
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 9.6e-47 191.0 170 54.1
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 9.6e-47 191.0 170 52.9
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 9.6e-47 191.0 170 54.1
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 9.6e-47 191.0 170 54.1
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 2.8e-46 189.5 170 51.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 2.8e-46 189.5 170 51.8
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.8e-46 189.5 170 54.7
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 8.1e-46 188.0 170 52.4
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.4e-45 187.2 170 52.9
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.8e-45 186.8 165 57.0
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.8e-45 186.8 157 54.1
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 2.4e-45 186.4 170 52.4
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 3.1e-45 186.0 201 47.3
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.3e-45 185.3 170 50.6
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 5.8e-44 181.8 170 50.6
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 9.9e-44 181.0 170 51.2
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 9.9e-44 181.0 166 55.4
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 9.9e-44 181.0 166 55.4
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 9.9e-44 181.0 168 51.8
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.9e-42 176.8 206 45.6
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.9e-42 176.8 240 40.0
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 7.9e-41 171.4 279 35.1
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.1e-39 167.5 170 47.6
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 8.1e-38 161.4 146 55.5
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.9e-35 152.9 170 47.6
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.8e-35 152.5 138 53.6
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 3.5e-33 146.0 169 40.2
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 8.4e-27 124.8 130 49.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-26 124.4 69 87.0
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.5e-26 123.2 164 39.0
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 4.2e-26 122.5 117 51.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 9.3e-26 121.3 80 66.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.2e-25 120.9 80 66.2
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.3e-24 117.5 193 35.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 3.9e-24 115.9 78 60.3
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.5e-23 113.2 78 59.0
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 1.4e-21 107.5 82 57.3
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.2e-20 104.4 69 65.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.0e-19 101.3 150 35.3
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.9e-19 99.8 68 61.8
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.4e-18 97.4 69 63.8
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.2e-18 96.3 145 40.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 7.2e-18 95.1 71 57.7
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.6e-17 94.0 105 43.8
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-17 94.0 69 62.3
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-17 93.6 88 54.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.7e-17 93.2 166 31.3
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 6.7e-08 62.0 27 96.3
EL10Ac5g11505 Beta vulgaris HOM05D005736 ORTHO05D026989 2.2e-06 57.0 76 44.7


User provided reference genes

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