Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 1.2e-152 543.1 275 100.0
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 1.5e-150 536.2 275 98.2
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 3.3e-150 535.0 275 97.8
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 2.8e-149 531.9 275 97.5
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 2.8e-149 531.9 275 97.5
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 2.8e-149 531.9 275 97.5
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 4.5e-147 524.6 275 95.6
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.5e-145 518.8 274 94.9
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 3.2e-145 518.5 275 94.5
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 3.6e-144 515.0 275 94.5
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 4.6e-144 514.6 275 94.2
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 6.1e-144 514.2 275 94.2
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 7.9e-144 513.8 275 94.2
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 1.8e-143 512.7 275 94.2
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 5.1e-143 511.1 276 93.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 6.7e-143 510.8 275 93.8
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 9.8e-118 427.2 279 82.4
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 5.5e-113 411.4 273 80.2
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 3.1e-108 395.6 277 74.7
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 4.5e-107 391.7 211 95.7
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 9.5e-105 384.0 273 72.9
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 2.1e-104 382.9 273 72.9
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 4.7e-104 381.7 273 72.5
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 2.3e-103 379.4 273 71.8
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 5.2e-103 378.3 275 70.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 6.8e-103 377.9 273 72.2
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 5.7e-102 374.8 207 94.2
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.9e-101 371.7 273 71.1
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 6.3e-101 371.3 269 71.7
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 1.4e-100 370.2 269 71.7
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 1.8e-100 369.8 274 70.1
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 3.2e-100 369.0 273 69.2
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 1.6e-99 366.7 281 68.3
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 2.7e-99 365.9 273 70.7
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 4.6e-99 365.2 271 70.5
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 4.6e-99 365.2 265 70.9
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 3.9e-98 362.1 274 69.3
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 8.6e-98 360.9 273 70.7
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 1.5e-97 360.1 279 68.1
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 1.5e-97 360.1 273 68.5
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 1.5e-97 360.1 274 69.0
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 4.3e-97 358.6 274 69.0
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 4.3e-97 358.6 268 67.9
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 7.3e-97 357.8 276 68.8
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 7.3e-97 357.8 275 68.0
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 2.1e-96 356.3 273 68.5
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.8e-96 355.9 275 67.6
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 8.0e-96 354.4 274 69.7
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 1.0e-95 354.0 282 66.7
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 1.8e-95 353.2 273 67.0
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 2.3e-95 352.8 274 65.7
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 4.0e-95 352.1 272 69.9
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 8.9e-95 350.9 288 64.2
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.9e-95 350.9 275 68.4
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.5e-94 350.1 274 66.8
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.5e-94 350.1 271 68.6
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.0e-94 349.7 273 68.1
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 2.6e-94 349.4 274 66.4
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 3.4e-94 349.0 273 66.3
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.4e-94 348.6 273 65.9
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 5.8e-94 348.2 273 67.4
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 9.8e-94 347.4 274 66.1
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 1.3e-93 347.1 270 64.8
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 1.7e-93 346.7 277 66.8
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 2.2e-93 346.3 269 68.4
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 2.2e-93 346.3 273 65.9
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 2.2e-93 346.3 272 67.3
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.9e-93 345.9 270 64.8
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 3.7e-93 345.5 277 66.8
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 6.4e-93 344.7 278 65.8
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 1.1e-92 344.0 275 65.8
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 1.1e-92 344.0 271 66.1
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.4e-92 343.6 272 66.9
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 1.9e-92 343.2 295 62.0
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.9e-92 343.2 270 67.0
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 2.4e-92 342.8 274 66.1
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 3.2e-92 342.4 274 66.1
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.2e-92 342.4 275 66.9
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 5.4e-92 341.7 264 67.4
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 7.0e-92 341.3 273 64.8
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 7.0e-92 341.3 274 64.2
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 9.2e-92 340.9 277 65.7
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 1.2e-91 340.5 263 66.5
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.6e-91 340.1 269 66.5
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 2.7e-91 339.3 273 66.7
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 3.5e-91 339.0 273 66.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 4.6e-91 338.6 271 68.3
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.0e-90 337.4 285 61.4
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.3e-90 337.0 274 66.1
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 1.7e-90 336.7 264 67.0
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 3.0e-90 335.9 281 64.8
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 3.0e-90 335.9 286 64.3
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 5.0e-90 335.1 273 65.2
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 6.6e-90 334.7 285 61.1
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.6e-90 334.3 285 61.1
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 8.6e-90 334.3 285 61.1
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.5e-89 333.6 264 65.9
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.9e-89 333.2 264 66.3
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 5.6e-89 331.6 274 64.2
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 5.6e-89 331.6 273 62.3
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 9.5e-89 330.9 297 60.6
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.8e-88 329.3 274 62.8
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 3.1e-87 325.9 281 61.9
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 8.9e-87 324.3 243 68.3
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 2.6e-86 322.8 277 63.9
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 4.4e-86 322.0 278 62.2
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 1.3e-85 320.5 274 63.9
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 2.2e-85 319.7 292 60.6
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 4.9e-85 318.5 270 64.4
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 8.3e-85 317.8 274 62.8
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 3.0e-82 309.3 291 57.0
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 6.6e-82 308.1 280 61.8
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 1.5e-81 307.0 286 59.8
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 1.9e-81 306.6 273 61.5
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 9.5e-81 304.3 265 61.5
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 1.4e-79 300.4 233 70.8
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 3.1e-79 299.3 264 59.8
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 2.6e-78 296.2 286 59.4
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 3.4e-78 295.8 207 75.4
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 4.4e-78 295.4 206 75.7
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 4.4e-78 295.4 271 59.0
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 8.4e-77 291.2 269 59.9
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 1.1e-76 290.8 286 58.4
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 1.2e-75 287.3 274 59.5
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 6.0e-75 285.0 231 66.2
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 1.6e-72 276.9 226 63.7
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 2.1e-67 260.0 290 53.1
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.3e-64 250.8 267 51.3
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 3.6e-64 249.2 265 51.7
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 8.4e-61 238.0 271 50.9
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 1.9e-60 236.9 217 59.4
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 9.3e-60 234.6 168 72.6
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.2e-59 234.2 179 70.9
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 2.6e-54 216.5 172 66.3
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 9.3e-52 208.0 284 44.0
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 1.1e-47 194.5 190 58.4
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 4.3e-41 172.6 130 66.2
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 1.4e-36 157.5 127 61.4
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 5.0e-29 132.5 85 81.2
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 9.4e-28 128.3 270 34.4
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.2e-27 127.9 256 32.0
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 2.0e-22 110.5 110 51.8
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 1.6e-11 74.3 186 28.5
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.8e-10 68.6 62 53.2
PGR119G1630 Punica granatum HOM05D001489 ORTHO05D001380 7.5e-09 65.5 185 28.1
Zm00001eb080970 Zea mays HOM05D002673 ORTHO05D002766 2.8e-08 63.5 206 28.2
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 1.4e-07 61.2 182 29.1
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 3.1e-07 60.1 214 23.8
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 3.1e-07 60.1 214 24.3
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 4.1e-07 59.7 181 27.6
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 5.3e-07 59.3 228 28.5
MSTRG.23328 Avicennia marina HOM05D002673 ORTHO05D002766 7.0e-07 58.9 175 26.9
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 7.0e-07 58.9 181 27.6
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 9.1e-07 58.5 181 28.2
Lalb_Chr23g0277261 Lupinus albus HOM05D002673 ORTHO05D002766 2.0e-06 57.4 175 29.7
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 2.0e-06 57.4 183 27.3
unitig_747.g21751 Utricularia gibba HOM05D002673 ORTHO05D002766 2.0e-06 57.4 174 28.2
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 2.7e-06 57.0 218 25.7
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.5e-06 56.6 218 25.7
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 3.5e-06 56.6 198 25.8
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 5.9e-06 55.8 229 25.3
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 5.9e-06 55.8 206 24.8
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.9e-06 55.8 218 25.2
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 5.9e-06 55.8 218 23.9
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 5.9e-06 55.8 181 27.6


User provided reference genes

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