Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 0.0e+00 1258.4 624 100.0
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.6e-293 1012.3 633 82.9
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.4e-291 1004.6 635 82.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 7.5e-291 1003.4 621 83.4
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 9.1e-289 996.5 614 83.7
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 6.0e-272 940.6 647 76.2
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.1e-256 889.0 646 72.6
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.9e-249 865.9 636 72.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 4.7e-245 851.3 558 79.4
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 6.6e-239 830.9 655 68.4
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 6.6e-239 830.9 647 68.5
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.9e-218 762.3 666 61.6
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 4.5e-195 685.3 463 75.6
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 6.2e-152 542.0 587 52.1
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.9e-129 467.2 659 40.8
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.8e-128 462.6 683 41.9
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 5.8e-126 455.7 671 42.3
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 2.3e-122 443.7 682 38.9
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.7e-122 441.8 676 39.5
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 8.7e-122 441.8 668 40.9
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 9.0e-119 431.8 705 40.3
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 9.0e-119 431.8 668 40.4
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.2e-118 431.4 682 38.7
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.4e-118 429.9 693 39.1
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 7.6e-118 428.7 681 39.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 2.2e-117 427.2 656 40.1
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 6.4e-117 425.6 671 41.0
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-116 423.7 714 37.8
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.4e-116 423.7 666 39.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.5e-115 419.9 664 38.6
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 6.0e-115 419.1 655 39.2
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 7.9e-115 418.7 670 40.4
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.3e-114 417.2 673 40.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 8.7e-114 415.2 651 39.5
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.5e-113 414.5 638 40.1
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.3e-112 411.4 677 39.1
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.4e-111 407.9 669 38.6
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 3.1e-111 406.8 687 36.7
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 6.9e-111 405.6 602 40.7
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.5e-110 404.4 646 39.9
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.5e-110 404.4 719 37.1
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.9e-109 399.4 685 38.1
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 3.2e-108 396.7 648 39.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.2e-108 396.4 650 39.4
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 7.4e-105 385.6 641 39.5
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 9.6e-105 385.2 626 38.2
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.3e-104 384.8 655 36.8
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.8e-104 382.9 638 37.6
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 6.2e-104 382.5 676 37.9
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.1e-103 381.7 671 37.0
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 1.0e-101 375.2 647 37.9
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.8e-101 373.2 612 37.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.9e-100 370.9 687 34.9
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 3.2e-100 370.2 678 36.7
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 7.2e-100 369.0 586 37.9
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 9.3e-100 368.6 684 37.0
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 7.4e-97 359.0 570 38.9
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 3.7e-96 356.7 694 35.0
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 2.4e-95 354.0 611 36.7
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.2e-94 351.7 603 37.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.6e-94 350.5 679 35.6
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.0e-93 348.6 588 36.2
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.4e-92 344.7 675 34.4
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.2e-91 341.7 681 34.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.6e-91 340.1 649 35.0
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 6.1e-91 339.3 719 33.9
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.0e-90 338.6 576 36.6
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 3.9e-90 336.7 650 34.3
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 8.8e-90 335.5 653 35.5
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 2.0e-89 334.3 629 34.8
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.3e-88 331.6 675 34.7
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.7e-88 331.3 674 34.4
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 2.8e-88 330.5 582 34.2
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 1.1e-84 318.5 631 34.1
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 4.2e-84 316.6 539 39.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.1e-83 314.3 690 32.9
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 2.7e-83 313.9 618 34.6
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 7.4e-81 305.8 570 35.4
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 8.2e-80 302.4 630 33.3
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.4e-79 300.8 535 36.1
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 7.0e-79 299.3 610 33.9
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 7.0e-79 299.3 715 31.7
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.6e-75 287.0 702 30.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.0e-74 283.9 575 33.9
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 5.2e-74 283.1 635 32.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.0e-73 281.2 548 34.3
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.3e-72 278.5 399 40.1
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 4.8e-72 276.6 421 37.8
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 2.0e-70 271.2 336 45.5
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.7e-70 270.8 426 38.0
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.2e-69 267.7 651 31.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.9e-68 264.6 651 31.8
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 1.0e-66 258.8 655 31.3
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.3e-66 257.7 624 30.6
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 5.9e-62 243.0 672 28.9
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 8.8e-58 229.2 684 30.3
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 3.8e-53 213.8 370 37.3
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 1.9e-52 211.5 390 32.8
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-38 165.6 191 51.3
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 2.0e-38 164.9 358 33.8
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 7.3e-36 156.4 295 36.3
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 4.0e-34 150.6 282 34.4
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 7.8e-30 136.3 123 54.5
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.6e-19 102.1 190 33.2
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.8e-18 98.6 136 41.2
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.5e-17 95.5 551 24.0
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.3e-16 92.4 95 54.7
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.2e-15 87.8 59 72.9
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.2e-15 87.8 59 72.9
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 5.4e-15 87.0 226 31.4
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.0e-10 70.9 359 25.9
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 2.0e-09 68.6 86 44.2
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.9e-07 62.0 122 36.1
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.1e-07 60.1 137 29.9
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.6e-06 58.9 190 27.9


User provided reference genes

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