Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-76 289.7 142 100.0
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-57 225.3 117 92.3
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-57 224.9 124 88.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-57 224.9 124 87.9
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.8e-57 224.9 124 87.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.1e-56 223.4 124 87.9
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.4e-56 223.0 125 87.2
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.2e-56 220.7 125 86.4
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 7.9e-55 217.2 125 85.6
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 7.9e-55 217.2 124 84.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.8e-54 216.1 124 84.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-54 215.7 126 86.5
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 2.3e-54 215.7 124 84.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 3.0e-54 215.3 125 84.8
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-53 213.4 125 84.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.6e-52 209.5 127 83.5
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.8e-52 208.0 124 83.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.4e-51 206.5 126 81.7
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 7.2e-48 194.1 124 77.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-40 169.5 103 78.6
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.5e-40 169.1 125 67.2
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.8e-36 154.8 124 58.1
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.4e-35 152.5 124 58.9
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 3.1e-35 152.1 124 60.5
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 5.3e-35 151.4 124 60.5
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 2.0e-34 149.4 124 59.7
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 2.0e-34 149.4 124 59.7
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.5e-34 148.3 124 58.1
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.5e-34 148.3 124 59.7
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.5e-34 148.3 120 57.5
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 7.7e-34 147.5 124 57.3
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 7.7e-34 147.5 120 57.5
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.0e-33 147.1 124 57.3
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.0e-33 147.1 124 58.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.0e-33 147.1 124 58.1
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.0e-33 147.1 124 58.1
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.0e-33 147.1 120 57.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.0e-33 147.1 120 59.2
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.0e-33 147.1 124 58.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.0e-33 147.1 120 58.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-33 146.7 124 55.6
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-33 146.7 124 55.6
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.3e-33 146.7 124 58.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.3e-33 146.7 120 59.2
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-33 146.7 124 58.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.3e-33 146.7 124 57.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.7e-33 146.4 120 60.0
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.7e-33 146.4 120 58.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.7e-33 146.4 124 58.1
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.9e-33 145.6 121 56.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.9e-33 145.6 124 56.5
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 3.8e-33 145.2 124 55.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.8e-33 145.2 124 58.1
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 5.0e-33 144.8 124 59.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 5.0e-33 144.8 124 58.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 6.5e-33 144.4 124 57.3
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 6.5e-33 144.4 120 55.8
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.5e-33 144.4 125 58.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 8.5e-33 144.1 137 53.3
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 8.5e-33 144.1 137 53.3
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.1e-32 143.7 129 55.8
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.1e-32 143.7 125 58.4
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.5e-32 143.3 121 58.7
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 5.5e-32 141.4 124 53.2
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 7.2e-32 141.0 124 52.4
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 9.4e-32 140.6 122 55.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.4e-32 140.6 120 56.7
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 9.4e-32 140.6 124 54.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.6e-31 139.8 124 52.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.6e-31 139.8 124 56.5
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.6e-31 139.8 129 51.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.1e-31 139.4 129 54.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.7e-31 139.0 120 55.8
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.7e-31 139.0 120 53.3
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 3.6e-31 138.7 127 57.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 3.6e-31 138.7 121 56.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.7e-31 138.3 124 52.4
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.0e-30 137.1 124 54.8
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.0e-30 137.1 120 56.7
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.0e-30 137.1 132 54.5
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.4e-30 136.7 124 55.6
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.3e-30 136.0 120 54.2
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-30 136.0 124 50.0
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 2.3e-30 136.0 127 53.5
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.0e-30 135.2 124 51.6
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 4.0e-30 135.2 120 50.0
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 8.8e-30 134.0 120 52.5
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 8.8e-30 134.0 127 52.0
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 2.0e-29 132.9 128 51.6
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.0e-29 132.9 120 51.7
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.0e-29 132.9 120 50.8
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.3e-29 132.1 123 52.8
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 4.4e-29 131.7 83 80.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.7e-29 131.3 124 54.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 7.5e-29 131.0 121 47.1
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 9.7e-29 130.6 126 54.0
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.7e-28 129.8 131 48.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.8e-28 129.0 125 52.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 3.7e-28 128.6 120 48.3
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 4.8e-28 128.3 120 50.8
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 8.2e-28 127.5 83 78.3
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-27 127.1 83 79.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.4e-27 126.7 83 79.5
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.4e-27 126.7 83 79.5
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.8e-27 126.3 132 49.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.8e-27 126.3 120 50.8
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 4.1e-27 125.2 129 46.5
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 5.3e-27 124.8 120 47.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-26 123.2 126 57.1
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.6e-26 123.2 126 57.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.7e-26 122.5 123 50.4
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.5e-26 122.1 124 49.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.5e-26 121.7 120 50.8
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 5.9e-26 121.3 125 48.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 5.9e-26 121.3 126 50.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.3e-25 120.2 120 47.5
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.9e-25 119.0 122 45.9
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.8e-25 118.6 124 47.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.5e-25 117.9 117 53.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.9e-24 116.3 121 46.3
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-23 113.6 130 45.4
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.1e-23 112.8 121 46.3
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 3.6e-23 112.1 128 45.3
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 3.6e-23 112.1 128 45.3
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 6.1e-23 111.3 107 54.2
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 2.3e-22 109.4 122 45.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.3e-22 109.4 124 45.2
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.0e-21 106.3 123 45.5
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 4.5e-18 95.1 120 45.0
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.7e-18 94.4 102 43.1
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.7e-18 94.4 127 39.4
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.7e-17 93.2 127 37.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.7e-17 93.2 127 37.0
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.1e-16 90.5 115 43.5
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.5e-16 89.4 132 34.8
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.5e-16 88.2 130 36.9
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.6e-15 86.7 215 28.4
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 6.1e-15 84.7 121 37.2
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.4e-13 79.0 151 33.1
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.6e-10 70.1 94 42.6
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 7.3e-08 61.2 149 30.9
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.8e-07 59.3 57 52.6
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 6.8e-06 54.7 43 58.1


User provided reference genes

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