Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23180 Brassica carinata HOM05D000042 ORTHO05D000028 1.2e-65 253.1 133 100.0
C04p35030 Brassica napus HOM05D000042 ORTHO05D000028 2.6e-31 139.0 98 77.6
BcaC07g40392 Brassica carinata HOM05D000042 ORTHO05D000028 7.5e-31 137.5 102 72.5
BcaC02g09933 Brassica carinata HOM05D000042 ORTHO05D000028 9.7e-31 137.1 98 76.5
BolC4t25060H Brassica oleracea HOM05D000042 ORTHO05D000028 9.7e-31 137.1 98 76.5
BraA04t16037Z Brassica rapa HOM05D000042 ORTHO05D000028 1.7e-30 136.3 98 76.5
BcaB02g08318 Brassica carinata HOM05D000042 ORTHO05D000028 4.8e-30 134.8 96 78.1
Sp5g05210 Schrenkiella parvula HOM05D000042 ORTHO05D000028 8.3e-30 134.0 95 78.9
Thhalv10006251m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 5.3e-29 131.3 95 76.8
BcaB02g07609 Brassica carinata HOM05D000042 ORTHO05D000028 1.3e-27 126.7 97 77.3
A09p50280 Brassica napus HOM05D000042 ORTHO05D000028 1.7e-27 126.3 97 70.1
BraA09t40479Z Brassica rapa HOM05D000042 ORTHO05D000028 1.7e-27 126.3 97 70.1
C08p32790 Brassica napus HOM05D000042 ORTHO05D000028 5.0e-27 124.8 97 71.1
BolC8t50890H Brassica oleracea HOM05D000042 ORTHO05D000028 5.0e-27 124.8 97 71.1
A04p03160 Brassica napus HOM05D000042 ORTHO05D000028 1.9e-26 122.9 122 61.5
Carub.0005s2423 Capsella rubella HOM05D000042 ORTHO05D000028 6.1e-25 117.9 120 60.0
A07p23370 Brassica napus HOM05D000042 ORTHO05D000028 1.0e-24 117.1 84 78.6
BraA07t30002Z Brassica rapa HOM05D000042 ORTHO05D000028 1.0e-24 117.1 84 78.6
AT3G57390 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 6.8e-24 114.4 126 54.0
AL5G38920 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 3.4e-23 112.1 124 54.8
BcaC08g44836 Brassica carinata HOM05D000042 ORTHO05D000028 1.7e-22 109.8 82 75.6
C06p24440 Brassica napus HOM05D000042 ORTHO05D000028 1.7e-22 109.8 82 75.6
BolC6t37591H Brassica oleracea HOM05D000042 ORTHO05D000028 1.7e-22 109.8 82 75.6
Aa31LG10G12220 Aethionema arabicum HOM05D000042 ORTHO05D000028 2.1e-17 92.8 83 65.1
THA.LOC104824433 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.2e-15 87.0 115 47.8
THA.LOC104804844 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.5e-15 86.7 103 50.5
BolC6t35967H Brassica oleracea HOM05D000042 ORTHO05D020036 2.0e-15 86.3 65 75.4
THA.LOC104817587 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 5.7e-15 84.7 101 48.5
BraA06t23345Z Brassica rapa HOM05D000042 ORTHO05D020036 2.8e-14 82.4 99 56.6
A06p01180 Brassica napus HOM05D000042 ORTHO05D020036 1.1e-13 80.5 65 69.2
BcaC08g43503 Brassica carinata HOM05D000042 ORTHO05D020036 5.6e-10 68.2 53 73.6
ClCG04G003520 Citrullus lanatus HOM05D000042 ORTHO05D000028 6.1e-09 64.7 91 45.1
MELO3C019192.2 Cucumis melo HOM05D000042 ORTHO05D000028 8.0e-09 64.3 91 44.0
TWI77G0779 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.3e-08 62.8 61 49.2
Gohir.D11G330500 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.1e-08 62.4 61 54.1
Gorai.007G360800 Gossypium raimondii HOM05D000042 ORTHO05D000028 3.1e-08 62.4 61 52.5
Atru.chr1.1136 Acer truncatum HOM05D000042 ORTHO05D000028 1.5e-07 60.1 85 42.4
Thecc.05G150100 Theobroma cacao HOM05D000042 ORTHO05D000028 1.5e-07 60.1 91 41.8
Duzib093G0336 Durio zibethinus HOM05D000042 ORTHO05D000028 3.4e-07 58.9 61 50.8
Dinv39623 Davidia involucrata HOM05D000042 ORTHO05D000028 4.4e-07 58.5 62 46.8
SalBow6G2376 Salvia bowleyana HOM05D027860 ORTHO05D000028 5.8e-07 58.2 69 43.5
Gohir.D11G329600 Gossypium hirsutum HOM05D000042 ORTHO05D000028 7.5e-07 57.8 61 49.2
PGR004G1335 Punica granatum HOM05D000042 ORTHO05D000028 9.8e-07 57.4 60 46.7
MSTRG.19853 Avicennia marina HOM05D000042 ORTHO05D000028 1.7e-06 56.6 68 39.7
CSS0023376 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.7e-06 56.6 62 45.2
Cfa016796 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.7e-06 56.6 87 41.4
Cfa016798 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.7e-06 56.6 68 47.1
Ciclev10005698m.g Citrus clementina HOM05D000042 ORTHO05D000028 1.7e-06 56.6 60 48.3
Lalb_Chr21g0316521 Lupinus albus HOM05D000042 ORTHO05D000028 1.7e-06 56.6 60 48.3
BcaC02g09932 Brassica carinata HOM05D000042 ORTHO05D000028 2.2e-06 56.2 34 82.4
Cpa.g.c37200 Carica papaya HOM05D000042 ORTHO05D000028 2.2e-06 56.2 61 45.9
Duzib128G0515 Durio zibethinus HOM05D000042 ORTHO05D000028 2.2e-06 56.2 88 40.9
Migut.O00954 Erythranthe guttata HOM05D027860 ORTHO05D000028 2.2e-06 56.2 68 39.7
Cc06_g17700 Coffea canephora HOM05D000042 ORTHO05D000028 2.9e-06 55.8 101 31.7
Psat6g113320 Pisum sativum HOM05D000042 ORTHO05D000028 2.9e-06 55.8 84 39.3
Aqoxy1G00318 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 3.7e-06 55.5 60 48.3
CiPaw.09G039300 Carya illinoinensis HOM05D000042 ORTHO05D000028 4.9e-06 55.1 61 44.3
CsaV3_4G028880 Cucumis sativus L. HOM05D000042 ORTHO05D000028 6.4e-06 54.7 62 45.2
Lju124C44T12 Lonicera japonica HOM05D000042 ORTHO05D000028 8.3e-06 54.3 62 40.3
Nn2g15187 Nelumbo nucifera HOM05D000042 ORTHO05D000028 8.3e-06 54.3 60 48.3


User provided reference genes

Program Settings