Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.9e-76 288.1 151 100.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 6.5e-31 137.9 107 74.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 7.2e-30 134.4 111 66.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.1e-29 132.9 112 65.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.1e-29 132.9 111 65.8
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.1e-29 132.9 112 65.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 2.1e-29 132.9 111 65.8
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 3.6e-29 132.1 117 65.0
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.9e-29 131.0 105 70.5
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.0e-28 129.0 129 61.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.4e-22 110.2 135 55.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 4.2e-22 108.6 130 53.8
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.5e-19 100.1 105 58.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.3e-19 99.0 107 57.0
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.3e-18 97.1 134 51.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.8e-18 95.9 88 64.8
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.7e-18 95.5 138 48.6
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 7.0e-17 91.3 131 47.3
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-16 90.5 129 50.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.6e-16 90.1 129 51.2
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.6e-16 90.1 129 51.2
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.6e-16 90.1 107 54.2
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.0e-16 89.7 130 47.7
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.0e-16 89.7 129 50.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.0e-16 89.7 106 54.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 4.5e-16 88.6 107 53.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.0e-15 87.4 104 51.9
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.0e-15 87.4 131 45.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.0e-15 87.4 133 45.1
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-15 86.7 103 54.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.2e-15 86.3 104 51.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.9e-15 85.9 102 48.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.9e-15 85.9 128 46.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.8e-15 85.5 126 45.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 6.5e-15 84.7 128 47.7
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 8.5e-15 84.3 103 52.4
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.1e-14 84.0 129 45.0
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.1e-14 84.0 108 46.3
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.5e-14 83.6 110 49.1
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.5e-14 83.6 110 50.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.5e-14 83.6 108 46.3
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.2e-14 82.4 129 49.6
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.2e-14 82.4 118 44.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 4.2e-14 82.0 107 48.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.5e-14 81.6 137 43.8
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 5.5e-14 81.6 135 44.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.5e-14 81.6 116 44.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 7.2e-14 81.3 128 45.3
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 9.4e-14 80.9 114 49.1
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 9.4e-14 80.9 102 51.0
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.6e-13 80.1 139 42.4
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.1e-13 79.7 115 49.6
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.1e-13 79.7 108 49.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.7e-13 79.3 129 42.6
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.7e-13 79.3 124 45.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.7e-13 79.3 116 48.3
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.7e-13 79.3 143 44.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.7e-13 78.6 104 46.2
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 4.7e-13 78.6 128 48.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.7e-13 78.6 109 46.8
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.1e-13 78.2 108 45.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 6.1e-13 78.2 109 48.6
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.0e-13 77.8 149 42.3
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-12 77.0 107 45.8
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-12 77.0 159 38.4
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-12 77.0 159 38.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.4e-12 77.0 108 44.4
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.8e-12 76.6 103 47.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.8e-12 76.6 109 47.7
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.3e-12 76.3 90 48.9
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 2.3e-12 76.3 107 49.5
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 3.0e-12 75.9 109 46.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 3.0e-12 75.9 157 41.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-12 75.9 108 44.4
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.0e-12 75.9 104 45.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.0e-12 75.9 141 36.2
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.0e-12 75.9 108 42.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 4.0e-12 75.5 104 48.1
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 5.2e-12 75.1 163 36.8
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.7e-12 74.7 79 54.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.7e-12 74.7 90 48.9
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 6.7e-12 74.7 78 52.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 6.7e-12 74.7 106 43.4
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 8.8e-12 74.3 102 45.1
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 8.8e-12 74.3 81 50.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-11 73.6 101 44.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.5e-11 73.6 123 43.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.0e-11 73.2 76 56.6
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.0e-11 73.2 134 41.8
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.6e-11 72.8 115 42.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.3e-11 72.4 115 42.6
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 3.3e-11 72.4 106 47.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 4.4e-11 72.0 121 43.0
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 4.4e-11 72.0 115 42.6
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.4e-11 72.0 72 55.6
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 5.7e-11 71.6 131 43.5
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 7.5e-11 71.2 105 46.7
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.3e-10 70.5 100 45.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.7e-10 70.1 129 38.8
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-10 68.9 121 38.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 4.8e-10 68.6 132 40.2
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 8.2e-10 67.8 89 46.1
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.1e-09 67.4 105 43.8
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.8e-09 66.6 115 40.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.4e-09 66.2 115 38.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.4e-09 66.2 138 38.4
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 4.1e-09 65.5 118 39.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.1e-09 65.5 122 41.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.3e-09 65.1 115 38.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.3e-09 65.1 138 38.4
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 7.0e-09 64.7 102 42.2
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 7.0e-09 64.7 121 40.5
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.2e-08 63.9 118 40.7
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.2e-08 63.9 89 43.8
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.2e-08 63.9 89 43.8
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.7e-08 62.8 75 45.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.5e-08 62.0 75 44.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.5e-08 62.0 75 44.0
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 4.5e-08 62.0 75 44.0
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.3e-07 60.5 113 37.2
A09p43120 Brassica napus HOM05D000091 ORTHO05D004312 1.9e-06 56.6 51 60.8
BraA09t39782Z Brassica rapa HOM05D000091 ORTHO05D004312 1.9e-06 56.6 51 60.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.4e-06 54.3 75 46.7


User provided reference genes

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