Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 1.2e-58 229.9 147 100.0
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 5.3e-30 134.8 136 68.4
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 5.9e-29 131.3 135 67.4
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 1.3e-28 130.2 134 63.4
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 5.0e-28 128.3 135 66.7
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 5.0e-28 128.3 135 66.7
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 2.5e-27 125.9 134 64.9
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 4.7e-26 121.7 135 51.1
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 1.8e-25 119.8 135 52.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 1.3e-23 113.6 142 57.0
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 1.3e-23 113.6 152 55.9
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 1.3e-20 103.6 134 54.5
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 5.0e-20 101.7 83 65.1
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 6.6e-20 101.3 134 52.2
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 8.0e-18 94.4 83 61.4
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 5.7e-16 88.2 135 38.5
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.7e-15 86.7 134 37.3
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 4.9e-15 85.1 134 38.1
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 8.3e-15 84.3 134 36.6
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 1.4e-14 83.6 134 33.6
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 2.4e-14 82.8 135 34.1
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 3.1e-14 82.4 134 32.8
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 4.1e-14 82.0 135 34.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 5.4e-14 81.6 134 35.8
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 5.4e-14 81.6 134 35.8
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 7.0e-14 81.3 131 34.4
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 7.0e-14 81.3 135 32.6
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 7.0e-14 81.3 138 38.4
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 9.2e-14 80.9 139 35.3
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 2.0e-13 79.7 134 35.8
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 2.7e-13 79.3 134 32.8
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 2.7e-13 79.3 134 32.8
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 2.7e-13 79.3 134 31.3
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.7e-13 79.3 134 35.8
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 3.5e-13 79.0 134 32.1
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 3.5e-13 79.0 134 32.8
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 3.5e-13 79.0 150 38.7
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 4.5e-13 78.6 136 35.3
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 3.8e-12 75.5 134 31.3
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 3.8e-12 75.5 131 35.1
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 5.0e-12 75.1 136 32.4
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 5.0e-12 75.1 135 34.1
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 6.6e-12 74.7 135 34.1
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 8.6e-12 74.3 130 36.2
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 1.1e-11 73.9 131 32.1
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.1e-11 73.9 135 34.1
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.5e-11 73.6 137 33.6
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.9e-11 73.2 139 29.5
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 1.9e-11 73.2 136 34.6
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 3.3e-11 72.4 138 31.9
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.3e-11 72.4 134 33.6
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 4.3e-11 72.0 134 33.6
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 7.3e-11 71.2 132 32.6
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 1.6e-10 70.1 131 31.3
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 1.6e-10 70.1 135 31.9
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 1.6e-10 70.1 132 31.8
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 2.1e-10 69.7 135 35.6
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.8e-10 69.3 134 32.8
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 3.6e-10 68.9 135 32.6
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 4.7e-10 68.6 135 35.6
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 6.1e-10 68.2 134 32.1
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 6.1e-10 68.2 132 31.8
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 6.1e-10 68.2 136 32.4
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 6.1e-10 68.2 133 30.8
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 8.0e-10 67.8 130 31.5
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 8.0e-10 67.8 137 30.7
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 8.0e-10 67.8 135 35.6
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.0e-09 67.4 138 32.6
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 1.0e-09 67.4 130 32.3
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 1.4e-09 67.0 135 34.1
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.4e-09 67.0 134 29.9
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 2.3e-09 66.2 134 32.8
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 3.1e-09 65.9 122 29.5
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 4.0e-09 65.5 134 31.3
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 5.2e-09 65.1 131 35.1
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 5.2e-09 65.1 134 32.8
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 6.8e-09 64.7 131 29.8
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 8.9e-09 64.3 132 31.1
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 1.2e-08 63.9 135 28.1
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.2e-08 63.9 109 34.9
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 2.0e-08 63.2 138 28.3
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 2.6e-08 62.8 134 33.6
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 5.8e-08 61.6 134 32.1
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 9.8e-08 60.8 153 31.4
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 2.9e-07 59.3 166 26.5
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 2.9e-07 59.3 139 32.4
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 4.9e-07 58.5 126 35.7
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 6.4e-07 58.2 135 32.6
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 1.9e-06 56.6 171 25.7
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 5.4e-06 55.1 136 28.7
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 5.4e-06 55.1 143 39.9


User provided reference genes

Program Settings