Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-95 354.0 279 100.0
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.1e-87 327.4 280 95.7
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.1e-87 327.4 280 95.7
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 3.1e-87 325.9 280 95.4
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 3.1e-87 325.9 280 95.4
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 6.9e-87 324.7 280 94.6
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.6e-86 322.8 279 94.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.2e-83 313.9 279 92.1
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.0e-82 310.8 279 93.5
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-82 309.3 279 93.2
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 3.0e-82 309.3 279 93.2
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-81 307.4 279 93.2
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.3e-80 303.9 280 90.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 5.3e-79 298.5 284 89.8
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.9e-78 295.0 280 90.0
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.7e-77 293.5 277 89.2
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.9e-77 292.7 267 91.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 7.4e-73 278.1 279 86.7
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.3e-69 267.3 279 83.9
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.7e-69 266.9 279 84.9
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 4.7e-67 258.8 277 85.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 4.7e-67 258.8 279 83.9
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.0e-66 257.7 280 82.9
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 8.8e-66 254.6 275 84.0
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.5e-65 253.8 275 84.0
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-65 253.4 275 84.0
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.0e-65 253.4 275 84.0
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.6e-65 253.1 282 82.6
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.7e-65 251.9 275 83.6
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 7.0e-63 245.0 275 81.8
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.3e-61 240.7 267 83.1
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.8e-61 239.2 269 83.3
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.5e-61 238.4 267 83.1
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.5e-61 238.4 267 83.1
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 82.8
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 3.6e-59 232.6 267 73.4
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 8.0e-59 231.5 268 80.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-58 231.1 267 82.4
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.8e-58 230.3 269 79.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.0e-58 229.2 267 80.9
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 4.0e-58 229.2 267 81.6
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.2e-58 228.8 268 81.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.7e-58 228.4 267 81.3
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.7e-58 228.4 267 81.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.8e-56 223.0 254 82.7
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.7e-56 222.6 252 82.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 4.8e-56 222.2 267 78.7
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.8e-56 222.2 278 77.0
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 6.3e-56 221.9 267 79.8
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.3e-56 221.9 271 79.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.2e-56 221.5 256 81.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.2e-56 221.5 256 81.6
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.2e-56 221.5 256 81.6
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.1e-55 221.1 267 79.0
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.4e-55 219.9 256 80.9
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.1e-55 219.2 270 79.3
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 4.1e-55 219.2 262 80.2
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 5.3e-55 218.8 267 77.9
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.0e-55 218.4 254 80.7
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.6e-54 217.2 266 79.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 267 78.7
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.7e-54 216.5 266 77.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.5e-54 216.1 256 79.7
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.9e-54 215.3 267 78.7
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.9e-54 215.3 254 82.3
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 76.8
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 76.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.7e-53 213.8 264 77.7
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 277 76.9
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.8e-53 212.6 254 80.3
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 3.8e-53 212.6 267 76.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.5e-53 211.8 269 77.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 8.5e-53 211.5 267 72.7
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.5e-52 210.7 268 78.0
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 4.2e-52 209.1 267 77.2
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 4.2e-52 209.1 267 70.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 7.2e-52 208.4 255 79.2
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 7.2e-52 208.4 255 79.2
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 9.4e-52 208.0 254 77.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.2e-51 207.6 267 76.8
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.6e-51 207.2 267 77.2
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.7e-51 206.5 266 78.9
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 4.7e-51 205.7 264 76.5
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.7e-51 205.7 267 76.4
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 4.7e-51 205.7 266 75.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 6.1e-51 205.3 254 77.6
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 6.1e-51 205.3 253 79.1
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 6.1e-51 205.3 253 79.1
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.0e-50 204.5 275 75.6
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-50 204.1 264 77.7
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.8e-50 203.8 259 77.6
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-50 203.4 275 64.0
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.0e-50 202.6 275 73.1
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 6.8e-50 201.8 269 76.2
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 6.8e-50 201.8 269 76.2
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.8e-50 201.4 251 77.7
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.0e-49 200.3 270 48.5
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 2.6e-49 199.9 254 77.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.6e-49 199.9 230 85.7
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.4e-49 199.5 270 74.1
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 4.4e-49 199.1 264 76.5
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 5.7e-49 198.7 266 73.3
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 5.7e-49 198.7 266 73.3
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 5.7e-49 198.7 253 75.9
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.7e-48 196.1 254 76.0
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 4.8e-48 195.7 269 75.1
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 6.3e-48 195.3 270 74.1
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 6.3e-48 195.3 254 78.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.1e-47 194.5 252 78.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.8e-47 193.7 266 72.2
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 5.4e-47 192.2 266 74.8
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 9.1e-47 191.4 274 73.4
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-46 191.0 252 76.6
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.2e-46 191.0 254 78.0
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.0e-46 190.3 271 73.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.0e-46 190.3 266 69.5
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 2.7e-46 189.9 262 76.3
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.7e-46 189.9 245 78.8
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.7e-46 189.9 266 74.8
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.5e-46 189.1 266 73.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 5.5e-44 182.2 254 68.5
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 5.5e-44 182.2 266 73.3
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 7.2e-44 181.8 254 71.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.2e-43 181.0 230 81.7
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.1e-43 180.3 270 73.0
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.6e-43 179.5 279 72.8
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.7e-43 179.1 269 74.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 4.7e-43 179.1 241 78.8
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 6.1e-43 178.7 267 73.0
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 3.0e-42 176.4 269 71.0
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.7e-41 172.2 277 40.4
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 7.5e-41 171.8 235 80.9
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 7.5e-41 171.8 273 67.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.2e-40 170.2 253 73.1
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.8e-40 169.9 260 70.8
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 4.9e-40 169.1 261 70.5
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.4e-39 166.8 256 72.3
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.0e-38 163.7 217 82.0
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 2.7e-38 163.3 229 79.9
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.9e-37 159.8 230 78.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 4.7e-35 152.5 210 81.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-33 145.2 227 75.8
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 4.6e-30 136.0 209 78.5
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.7e-29 134.0 79 78.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.8e-26 122.1 87 73.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 6.8e-26 122.1 213 76.1
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 8.9e-26 121.7 87 67.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-25 120.9 97 63.9
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.9e-24 115.9 262 65.3
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.1e-23 114.8 274 62.0
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 3.2e-23 113.2 267 52.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.0e-21 108.2 278 56.8
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 5.0e-21 105.9 83 62.7
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.6e-19 99.8 83 57.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.3e-18 97.1 79 62.0
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-13 80.5 75 62.7
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.8e-10 70.9 58 62.1
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 7.1e-07 58.9 53 49.1
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 7.1e-07 58.9 77 36.4
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 9.2e-07 58.5 234 58.1


User provided reference genes

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