Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23135 Brassica carinata HOM05D004230 ORTHO05D007976 4.2e-220 768.1 492 100.0
BcaC09g49286 Brassica carinata HOM05D004230 ORTHO05D007976 1.5e-137 493.8 334 76.3
BcaC05g28343 Brassica carinata HOM05D004230 ORTHO05D007976 3.1e-122 443.0 383 59.3
BolC3t17847H Brassica oleracea HOM05D004230 ORTHO05D007976 7.6e-121 438.3 381 59.6
BcaC07g36911 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-119 433.7 366 60.7
BcaC02g09042 Brassica carinata HOM05D004230 ORTHO05D007976 2.4e-119 433.3 381 58.3
BcaC08g43996 Brassica carinata HOM05D004230 ORTHO05D007976 3.2e-119 433.0 380 58.4
BolC2t08696H Brassica oleracea HOM05D004230 ORTHO05D007976 6.2e-115 418.7 342 62.3
BcaC03g15070 Brassica carinata HOM05D004230 ORTHO05D007976 2.4e-114 416.8 342 62.0
C07p50550 Brassica napus HOM05D004230 ORTHO05D007976 5.8e-113 412.1 380 57.4
BcaB01g00472 Brassica carinata HOM05D004230 ORTHO05D007976 6.6e-109 398.7 383 55.4
C07p48530 Brassica napus HOM05D004230 ORTHO05D007976 3.6e-107 392.9 371 55.8
BolC7t45361H Brassica oleracea HOM05D004230 ORTHO05D007976 8.1e-107 391.7 371 55.5
BolC4t28062H Brassica oleracea HOM05D004230 ORTHO05D007976 2.6e-105 386.7 251 79.3
BraA06t24715Z Brassica rapa HOM05D004230 ORTHO05D007976 2.6e-105 386.7 251 79.3
BcaC09g52278 Brassica carinata HOM05D004230 ORTHO05D007976 7.6e-105 385.2 253 78.3
BolC1t02226H Brassica oleracea HOM05D004230 ORTHO05D007976 7.6e-105 385.2 253 78.3
C01p40550 Brassica napus HOM05D004230 ORTHO05D007976 1.9e-100 370.5 244 77.9
BraA01t02220Z Brassica rapa HOM05D004230 ORTHO05D007976 5.8e-97 359.0 380 51.6
BcaC03g16826 Brassica carinata HOM05D004230 ORTHO05D007976 2.5e-95 353.6 363 53.4
C01p22970 Brassica napus HOM05D004230 ORTHO05D007976 2.1e-94 350.5 240 76.2
C01p22920 Brassica napus HOM05D004230 ORTHO05D007976 1.0e-93 348.2 261 70.1
C05p44100 Brassica napus HOM05D004230 ORTHO05D007976 1.5e-92 344.4 382 50.3
C01p36620 Brassica napus HOM05D004230 ORTHO05D007976 4.8e-91 339.3 301 58.1
C04p52580 Brassica napus HOM05D004230 ORTHO05D007976 3.1e-90 336.7 229 75.5
BraA09t39059Z Brassica rapa HOM05D004230 ORTHO05D007976 5.3e-90 335.9 385 50.6
BcaB07g32504 Brassica carinata HOM05D004230 ORTHO05D007976 1.2e-89 334.7 394 47.2
C06p14020 Brassica napus HOM05D004230 ORTHO05D007976 2.6e-89 333.6 379 49.3
A09p35300 Brassica napus HOM05D004230 ORTHO05D007976 2.8e-83 313.5 384 47.9
Sp3g24280 Schrenkiella parvula HOM05D004230 ORTHO05D007976 6.3e-83 312.4 390 48.5
A06p45730 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-82 311.2 351 48.7
BcaC05g25838 Brassica carinata HOM05D004230 ORTHO05D007976 2.9e-80 303.5 308 52.6
Carub.0007s3043 Capsella rubella HOM05D004230 ORTHO05D007976 1.4e-79 301.2 264 59.5
BcaB05g22709 Brassica carinata HOM05D004230 ORTHO05D007976 9.4e-79 298.5 403 44.2
BraA06t26555Z Brassica rapa HOM05D004230 ORTHO05D007976 1.6e-78 297.7 350 47.7
BcaC09g49449 Brassica carinata HOM05D004230 ORTHO05D007976 1.0e-77 295.0 291 53.6
AT3G32904 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 1.4e-77 294.7 382 44.2
BraA03t13046Z Brassica rapa HOM05D004230 ORTHO05D007976 5.7e-76 289.3 383 44.4
BolC8t50322H Brassica oleracea HOM05D004230 ORTHO05D007976 1.7e-75 287.7 380 45.0
C01p22890 Brassica napus HOM05D004230 ORTHO05D007976 2.8e-75 287.0 163 86.5
Sp4g02630 Schrenkiella parvula HOM05D004230 ORTHO05D007976 5.3e-74 282.7 326 47.9
BcaC01g03708 Brassica carinata HOM05D004230 ORTHO05D007976 2.9e-72 276.9 309 48.2
BcaB06g26529 Brassica carinata HOM05D004230 ORTHO05D007976 2.7e-70 270.4 243 57.6
BcaC05g28003 Brassica carinata HOM05D004230 ORTHO05D007976 3.6e-70 270.0 397 42.1
C08p29240 Brassica napus HOM05D004230 ORTHO05D027608 1.5e-68 264.6 284 51.8
BcaB06g27526 Brassica carinata HOM05D004230 ORTHO05D007976 3.3e-68 263.5 355 44.5
BolC6t36485H Brassica oleracea HOM05D004230 ORTHO05D007976 5.7e-68 262.7 382 42.9
C07p53510 Brassica napus HOM05D004230 ORTHO05D027608 1.3e-67 261.5 273 51.6
BolC5t32761H Brassica oleracea HOM05D004230 ORTHO05D007976 3.7e-67 260.0 383 41.5
C05p40190 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-66 258.1 309 45.6
SpUn0171_0010 Schrenkiella parvula HOM05D004230 ORTHO05D007976 7.7e-65 252.3 243 55.6
BolC5t30511H Brassica oleracea HOM05D004230 ORTHO05D007976 1.0e-64 251.9 227 58.1
BcaB07g32180 Brassica carinata HOM05D004230 ORTHO05D007976 6.5e-64 249.2 295 47.8
AL5G11160 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 3.6e-62 243.4 166 68.7
Carub.0007s3042 Capsella rubella HOM05D004230 ORTHO05D007976 1.0e-61 241.9 255 52.5
C08p01070 Brassica napus HOM05D004230 ORTHO05D007976 2.8e-59 233.8 170 64.7
AL8G19300 Arabidopsis lyrata HOM05D004230 ORTHO05D000037 3.7e-59 233.4 202 58.9
Carub.0007s3044 Capsella rubella HOM05D004230 ORTHO05D007976 1.1e-58 231.9 313 45.4
BolC1t03622H Brassica oleracea HOM05D004230 ORTHO05D007976 7.0e-58 229.2 207 56.5
BolC8t50525H Brassica oleracea HOM05D004230 ORTHO05D027608 1.2e-57 228.4 251 50.2
BcaC07g39750 Brassica carinata HOM05D004230 ORTHO05D027608 2.2e-56 224.2 234 51.3
BraA03t15403Z Brassica rapa HOM05D004230 ORTHO05D007976 2.2e-56 224.2 218 55.0
BolC3t20706H Brassica oleracea HOM05D004230 ORTHO05D007976 6.5e-56 222.6 268 45.9
AT3G30520 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 3.2e-55 220.3 282 45.0
A06p33150 Brassica napus HOM05D004230 ORTHO05D007976 4.2e-55 219.9 156 67.9
BolC3t20713H Brassica oleracea HOM05D004230 ORTHO05D007976 4.0e-53 213.4 225 50.7
AT1G35820 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.7e-52 209.5 389 37.5
A06p33140 Brassica napus HOM05D004230 ORTHO05D007976 9.8e-52 208.8 190 56.8
Carub.0007s3045 Capsella rubella HOM05D004230 ORTHO05D007976 2.2e-51 207.6 204 55.9
Sp1g33580 Schrenkiella parvula HOM05D004230 ORTHO05D007976 2.0e-49 201.1 331 40.8
AT1G43720 Arabidopsis thaliana HOM05D004230 ORTHO05D018474 6.5e-48 196.1 260 44.2
AL5G20550 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.5e-47 194.1 286 42.3
Carub.0012s0003 Capsella rubella HOM05D004230 ORTHO05D007976 2.5e-47 194.1 155 63.9
BcaB04g18000 Brassica carinata HOM05D004230 ORTHO05D007976 1.6e-46 191.4 209 52.2
C08p27070 Brassica napus HOM05D004230 ORTHO05D007976 1.6e-46 191.4 118 74.6
C02p00010 Brassica napus HOM05D004230 ORTHO05D007976 2.7e-46 190.7 176 54.0
BcaC02g08615 Brassica carinata HOM05D004230 ORTHO05D007976 2.8e-43 180.6 237 45.6
Sp2g07590 Schrenkiella parvula HOM05D004230 ORTHO05D007976 8.3e-43 179.1 345 37.7
Sp5g19020 Schrenkiella parvula HOM05D004230 ORTHO05D007976 1.1e-42 178.7 276 42.0
A03p63250 Brassica napus HOM05D004230 ORTHO05D007976 2.4e-42 177.6 167 56.3
BolC3t17228H Brassica oleracea HOM05D004230 ORTHO05D007976 1.2e-41 175.3 144 59.7
A03p38990 Brassica napus HOM05D004230 ORTHO05D007976 2.3e-40 171.0 341 37.2
BraA06t25864Z Brassica rapa HOM05D004230 ORTHO05D018474 9.5e-39 165.6 234 42.3
A06p20520 Brassica napus HOM05D004230 ORTHO05D007976 2.8e-38 164.1 222 45.5
C03p27690 Brassica napus HOM05D004230 ORTHO05D007976 2.8e-38 164.1 133 58.6
BraA06t26245Z Brassica rapa HOM05D004230 ORTHO05D007976 3.6e-38 163.7 103 72.8
C05p46300 Brassica napus HOM05D004230 ORTHO05D007976 1.4e-37 161.8 133 58.6
BolC5t33360H Brassica oleracea HOM05D004230 ORTHO05D007976 1.3e-35 155.2 144 52.8
CARHR145800 Cardamine hirsuta HOM05D004230 ORTHO05D007976 4.9e-35 153.3 279 36.9
BcaC06g34422 Brassica carinata HOM05D004230 ORTHO05D007976 6.3e-35 152.9 353 32.0
AL7G44480 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.1e-34 150.2 167 47.3
AT3G42870 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 5.4e-34 149.8 253 38.3
BolC2t12231H Brassica oleracea HOM05D004230 ORTHO05D018474 2.7e-33 147.5 158 48.7
AL7G46530 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 4.3e-31 140.2 114 60.5
BcaC02g08607 Brassica carinata HOM05D004230 ORTHO05D018474 4.3e-31 140.2 195 41.5
BraA10t43214Z Brassica rapa HOM05D004230 ORTHO05D007976 2.3e-29 134.4 111 59.5
BraA05t21003Z Brassica rapa HOM05D004230 ORTHO05D041249 1.1e-26 125.6 185 40.5
Carub.0005s0823 Capsella rubella HOM05D004230 ORTHO05D007976 1.9e-26 124.8 301 32.9
Carub.0007s3014 Capsella rubella HOM05D004230 ORTHO05D007976 6.0e-25 119.8 201 37.3
BolC3t18593H Brassica oleracea HOM05D004230 ORTHO05D018474 1.3e-24 118.6 179 36.9
BolC8t46909H Brassica oleracea HOM05D004230 ORTHO05D007976 2.3e-24 117.9 79 70.9
C07p15900 Brassica napus HOM05D004230 ORTHO05D007976 8.6e-24 115.9 98 56.1
BolC7t42083H Brassica oleracea HOM05D004230 ORTHO05D007976 8.6e-24 115.9 98 56.1
BcaC09g49284 Brassica carinata HOM05D004230 ORTHO05D007976 1.1e-23 115.5 79 69.6
BolC2t08058H Brassica oleracea HOM05D004230 ORTHO05D007976 1.9e-23 114.8 98 55.1
BcaC01g02567 Brassica carinata HOM05D004230 ORTHO05D018474 2.5e-23 114.4 179 36.3
BolC4t26781H Brassica oleracea HOM05D004230 ORTHO05D018474 3.6e-22 110.5 170 38.2
AL8G23470 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 5.2e-21 106.7 73 68.5
C01p41050 Brassica napus HOM05D004230 ORTHO05D024011 1.5e-20 105.1 107 52.3
BolC1t04060H Brassica oleracea HOM05D004230 ORTHO05D024011 1.5e-20 105.1 107 52.3
C03p27680 Brassica napus HOM05D004230 ORTHO05D007976 5.8e-20 103.2 154 43.5
BcaC09g49346 Brassica carinata HOM05D004230 ORTHO05D024011 6.4e-19 99.8 140 42.1
Sp3g29180 Schrenkiella parvula HOM05D004230 ORTHO05D007976 8.3e-19 99.4 164 36.6
BcaC03g18110 Brassica carinata HOM05D004230 ORTHO05D007976 7.8e-17 92.8 83 53.0
C02p19260 Brassica napus HOM05D004230 ORTHO05D007976 7.8e-17 92.8 83 53.0
C07p28690 Brassica napus HOM05D004230 ORTHO05D007976 3.0e-16 90.9 75 57.3
BolC7t43407H Brassica oleracea HOM05D004230 ORTHO05D007976 3.0e-16 90.9 75 57.3
CARHR102540 Cardamine hirsuta HOM05D004230 ORTHO05D007976 3.0e-16 90.9 94 52.1
A09p29770 Brassica napus HOM05D004230 ORTHO05D007976 6.6e-16 89.7 156 35.3
BolC5t33361H Brassica oleracea HOM05D004230 ORTHO05D007976 1.9e-15 88.2 148 41.2
AL3G43870 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 5.6e-15 86.7 79 46.8
BolC2t12233H Brassica oleracea HOM05D004230 ORTHO05D007976 2.8e-14 84.3 76 51.3
AT5G36080 Arabidopsis thaliana HOM05D004230 ORTHO05D007976 4.7e-14 83.6 78 48.7
AL6G45690 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 8.1e-14 82.8 79 45.6
AL1G50740 Arabidopsis lyrata HOM05D004230 ORTHO05D007976 2.3e-13 81.3 72 51.4
BolC4t25589H Brassica oleracea HOM05D004230 ORTHO05D007976 1.7e-11 75.1 47 68.1
BolC3t20148H Brassica oleracea HOM05D004230 ORTHO05D007976 2.2e-11 74.7 71 49.3
C08p27080 Brassica napus HOM05D004230 ORTHO05D042725 1.4e-10 72.0 47 59.6
BraA06t26246Z Brassica rapa HOM05D004230 ORTHO05D042725 1.4e-10 72.0 47 59.6
CARHR113870 Cardamine hirsuta HOM05D004230 ORTHO05D007976 3.2e-10 70.9 64 53.1
Sp4g09110 Schrenkiella parvula HOM05D004230 ORTHO05D000563 3.2e-10 70.9 358 24.9
THA.LOC104819338 Tarenaya hassleriana HOM05D004230 ORTHO05D014126 7.1e-10 69.7 333 27.0
BolC4t26773H Brassica oleracea HOM05D004230 ORTHO05D007976 9.2e-10 69.3 43 69.8
BraA06t27442Z Brassica rapa HOM05D004230 ORTHO05D007976 2.3e-08 64.7 98 44.9
A01p32030 Brassica napus HOM05D004230 ORTHO05D024011 3.0e-08 64.3 62 51.6
BcaC09g49285 Brassica carinata HOM05D004230 ORTHO05D032226 3.9e-08 63.9 53 54.7
BcaC01g00380 Brassica carinata HOM05D004230 ORTHO05D007976 1.9e-07 61.6 55 50.9
A04p10960 Brassica napus HOM05D037366 ORTHO05D042224 1.9e-07 61.6 51 58.8
BraA04t16761Z Brassica rapa HOM05D037366 ORTHO05D042224 1.9e-07 61.6 51 58.8
BcaB05g22915 Brassica carinata HOM05D003348 ORTHO05D010016 7.3e-07 59.7 46 63.0
C07p04490 Brassica napus HOM05D068225 ORTHO05D040781 8.1e-06 56.2 93 40.9


User provided reference genes

Program Settings