Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23134 Brassica carinata HOM05D005509 ORTHO05D006411 2.0e-103 379.0 180 100.0
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 3.2e-16 89.4 54 77.8
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 3.2e-16 89.4 54 77.8
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 7.0e-16 88.2 54 75.9
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 7.0e-16 88.2 54 75.9
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 9.2e-16 87.8 54 75.9
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 9.2e-16 87.8 54 75.9
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 9.2e-16 87.8 54 75.9
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 1.2e-15 87.4 54 75.9
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 2.0e-15 86.7 54 74.1
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 2.0e-15 86.7 54 74.1
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 4.6e-15 85.5 54 72.2
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 5.9e-15 85.1 54 74.1
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 3.0e-14 82.8 54 70.4
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 2.5e-13 79.7 54 66.7
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 7.5e-10 68.2 45 73.3
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 1.3e-09 67.4 64 54.7
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 1.3e-09 67.4 55 56.4
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 1.3e-09 67.4 54 57.4
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 2.2e-09 66.6 54 55.6
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 2.2e-09 66.6 54 55.6
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 3.7e-09 65.9 54 53.7
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 4.9e-09 65.5 54 59.3
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 4.9e-09 65.5 54 59.3
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 4.9e-09 65.5 54 55.6
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 4.9e-09 65.5 54 59.3
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 6.4e-09 65.1 96 36.5
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 6.4e-09 65.1 54 57.4
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 6.4e-09 65.1 54 57.4
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 6.4e-09 65.1 54 55.6
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 6.4e-09 65.1 55 56.4
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 8.3e-09 64.7 52 57.7
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 8.3e-09 64.7 52 57.7
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 8.3e-09 64.7 54 57.4
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 8.3e-09 64.7 54 57.4
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 8.3e-09 64.7 54 57.4
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.1e-08 64.3 52 57.7
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 1.1e-08 64.3 54 55.6
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 1.1e-08 64.3 54 55.6
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 1.4e-08 63.9 52 55.8
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 1.4e-08 63.9 54 51.9
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 1.4e-08 63.9 52 57.7
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 1.4e-08 63.9 52 57.7
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 1.9e-08 63.5 54 57.4
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 1.9e-08 63.5 50 58.0
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 2.4e-08 63.2 54 55.6
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 2.4e-08 63.2 52 53.8
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 2.4e-08 63.2 52 57.7
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 2.4e-08 63.2 81 40.7
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 3.2e-08 62.8 52 53.8
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 3.2e-08 62.8 52 53.8
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 3.2e-08 62.8 52 57.7
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 3.2e-08 62.8 50 58.0
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 4.1e-08 62.4 52 55.8
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 4.1e-08 62.4 52 57.7
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 4.1e-08 62.4 52 55.8
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 5.4e-08 62.0 52 55.8
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 7.0e-08 61.6 54 53.7
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.2e-08 61.2 59 52.5
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 9.2e-08 61.2 54 51.9
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 9.2e-08 61.2 54 51.9
Sopen05g033040 Solanum pennellii HOM05D005509 ORTHO05D006411 9.2e-08 61.2 55 54.5
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 1.2e-07 60.8 54 55.6
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 1.2e-07 60.8 54 55.6
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 1.2e-07 60.8 52 55.8
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 1.6e-07 60.5 50 56.0
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 1.6e-07 60.5 54 51.9
CDE09G0335 Ceratophyllum demersum HOM05D002573 ORTHO05D002918 2.0e-07 60.1 50 56.0
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 2.0e-07 60.1 52 53.8
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 2.0e-07 60.1 55 50.9
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 2.7e-07 59.7 52 53.8
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 3.5e-07 59.3 54 50.0
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 3.5e-07 59.3 50 58.0
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 3.5e-07 59.3 50 58.0
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 4.6e-07 58.9 52 53.8
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 4.6e-07 58.9 52 53.8
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 4.6e-07 58.9 52 53.8
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 6.0e-07 58.5 50 54.0
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 6.0e-07 58.5 54 48.1
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 6.0e-07 58.5 52 53.8
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 6.0e-07 58.5 54 53.7
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 53.8
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 53.8
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 53.8
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 53.8
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 51.9
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 51.9
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 7.8e-07 58.2 52 53.8
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 1.0e-06 57.8 54 50.0
PGSC0003DMG400023526 Solanum tuberosum HOM05D005509 ORTHO05D006411 1.0e-06 57.8 55 50.9
BcaB04g18041 Brassica carinata HOM05D005509 ORTHO05D006411 1.3e-06 57.4 32 81.2
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 1.3e-06 57.4 60 46.7
Solyc05g054560.3 Solanum lycopersicum HOM05D005509 ORTHO05D006411 1.3e-06 57.4 55 50.9
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 1.3e-06 57.4 50 52.0
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 1.7e-06 57.0 52 51.9
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 1.7e-06 57.0 54 50.0
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 2.3e-06 56.6 52 50.0
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 2.3e-06 56.6 52 51.9
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 2.3e-06 56.6 54 48.1
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 3.9e-06 55.8 54 48.1
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 3.9e-06 55.8 52 50.0
Pp3c12_23720 Physcomitrium patens HOM05D005509 ORTHO05D006411 6.6e-06 55.1 52 50.0
Actinidia29219 Actinidia chinensis HOM05D005509 ORTHO05D006411 8.6e-06 54.7 48 54.2
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 8.6e-06 54.7 54 46.3
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 8.6e-06 54.7 52 46.2


User provided reference genes

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