Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1726.8 876 100.0
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1092.8 890 70.4
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.8e-301 1038.1 889 68.2
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 2.0e-286 989.2 846 68.2
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 9.5e-276 953.7 887 65.5
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 9.5e-276 953.7 887 65.5
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.0e-273 946.0 963 61.4
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 2.6e-265 919.1 932 59.9
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.2e-257 893.6 970 57.2
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.2e-257 893.6 960 57.9
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 2.1e-251 872.8 937 58.6
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 2.1e-251 872.8 937 58.6
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.1e-250 869.0 935 58.9
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 8.4e-248 860.9 975 56.1
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 4.9e-240 835.1 967 55.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 9.7e-228 794.3 935 55.9
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.8e-226 790.0 935 55.7
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.3e-224 783.9 940 55.3
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 6.7e-205 718.4 933 53.3
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 8.8e-205 718.0 933 53.2
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.6e-193 680.6 924 51.9
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-190 671.0 928 51.6
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 1.6e-190 670.6 928 51.6
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 4.5e-108 396.7 1060 34.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.5e-90 337.8 668 39.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.1e-25 122.1 225 33.3
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.1e-24 118.2 208 37.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 6.9e-24 117.1 219 34.2
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.7e-22 112.5 314 27.7
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.9e-22 111.7 314 27.1
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 1.2e-20 106.3 496 26.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.2e-20 106.3 516 24.0
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.6e-20 105.9 325 27.4
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 3.5e-20 104.8 449 25.2
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 3.9e-19 101.3 352 29.3
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.1e-19 100.9 263 30.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.9e-18 99.0 526 25.5
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.3e-18 98.2 414 27.1
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.8e-17 95.1 251 28.7
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 9.0e-16 90.1 227 31.3
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.2e-15 89.7 416 27.2
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.5e-15 89.4 481 23.5
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.6e-15 88.6 433 26.3
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.4e-15 88.2 243 28.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.4e-15 88.2 211 32.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 4.5e-15 87.8 211 32.7
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.8e-15 87.4 193 31.1
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.8e-15 87.4 308 27.9
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 5.8e-15 87.4 564 24.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.6e-15 87.0 216 30.6
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.0e-14 86.7 211 31.3
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.0e-14 86.7 211 32.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.9e-14 85.1 364 25.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 4.9e-14 84.3 400 25.2
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.4e-14 84.0 206 32.0
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 8.4e-14 83.6 492 24.6
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 8.4e-14 83.6 212 31.1
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.1e-13 83.2 269 27.9
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 1.4e-13 82.8 236 27.5
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.9e-13 82.4 284 26.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.9e-13 82.4 333 25.2
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 3.2e-13 81.6 427 24.8
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 3.2e-13 81.6 196 29.1
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.2e-13 81.6 203 31.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.5e-13 80.9 203 31.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 7.1e-13 80.5 402 27.1
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 7.1e-13 80.5 183 31.7
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.2e-12 79.7 194 30.9
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 1.2e-12 79.7 200 30.5
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.6e-12 79.3 251 27.1
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 2.1e-12 79.0 265 28.7
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 2.1e-12 79.0 533 24.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.1e-12 79.0 225 28.4
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.7e-12 78.6 200 31.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 3.5e-12 78.2 265 28.3
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 3.5e-12 78.2 377 27.1
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 3.5e-12 78.2 534 23.8
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 3.5e-12 78.2 188 32.4
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.5e-12 78.2 219 28.3
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 4.6e-12 77.8 231 26.0
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 4.6e-12 77.8 217 35.0
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 6.0e-12 77.4 373 25.5
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 6.0e-12 77.4 244 26.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.3e-11 76.3 188 30.9
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 3.0e-11 75.1 374 27.8
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 3.0e-11 75.1 299 27.4
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.9e-11 74.7 140 35.7
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 3.9e-11 74.7 249 28.1
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.9e-11 74.7 175 32.6
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.9e-11 74.7 243 26.7
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 5.1e-11 74.3 60 58.3
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 5.1e-11 74.3 638 21.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.1e-10 73.2 192 30.7
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 1.5e-10 72.8 286 26.2
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.5e-10 72.8 496 24.4
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.5e-10 72.8 197 25.9
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.9e-10 72.4 484 23.8
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.9e-10 72.4 197 29.9
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.9e-10 72.4 125 36.8
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.5e-10 72.0 202 30.7
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.5e-10 72.0 317 24.9
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.3e-10 71.6 82 47.6
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 4.3e-10 71.2 208 28.8
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 4.3e-10 71.2 523 23.9
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.6e-09 69.3 222 28.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.6e-09 69.3 475 23.6
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.1e-09 68.9 366 24.6
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.1e-09 68.9 332 25.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-09 68.9 259 26.3
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-09 68.9 259 26.3
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.1e-08 66.6 194 30.9
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.1e-08 66.6 161 31.1
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.8e-08 65.9 350 22.9
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.4e-08 65.5 286 25.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.1e-08 65.1 216 28.2
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 3.1e-08 65.1 75 42.7
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 6.9e-08 63.9 129 33.3
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 6.9e-08 63.9 143 29.4
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 9.0e-08 63.5 211 29.9
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.2e-07 63.2 164 25.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.2e-07 63.2 217 26.7
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 4.5e-07 61.2 165 28.5
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 4.5e-07 61.2 200 27.0
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 5.8e-07 60.8 269 25.3
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.2e-06 58.9 51 52.9
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.9e-06 57.8 265 23.8
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 6.5e-06 57.4 289 24.6
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 6.5e-06 57.4 517 25.0


User provided reference genes

Program Settings