Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 2.4e-116 422.2 211 100.0
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 2.0e-110 402.5 211 95.7
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 5.7e-110 401.0 211 95.3
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 3.5e-107 391.7 211 92.4
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 8.6e-106 387.1 211 91.5
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.1e-95 353.6 211 85.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.6e-91 338.2 210 81.0
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.6e-88 329.7 210 78.1
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 2.1e-88 329.3 210 78.6
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.1e-81 307.0 211 75.4
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.9e-76 289.7 207 71.0
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 7.8e-75 284.3 210 67.6
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 8.1e-72 274.2 211 69.7
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.1e-57 227.3 205 54.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 3.3e-57 225.7 205 53.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.1e-56 223.0 151 68.2
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.8e-56 221.9 205 53.2
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 8.1e-56 221.1 109 97.2
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.8e-55 219.9 209 53.1
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.0e-54 216.5 186 58.1
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.0e-54 216.5 194 56.7
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.6e-54 216.1 207 53.6
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 4.5e-54 215.3 191 54.5
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.0e-53 214.2 208 53.4
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.5e-53 211.5 206 53.4
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 8.4e-53 211.1 207 52.7
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 3.2e-52 209.1 212 51.4
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 4.2e-52 208.8 214 50.9
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 5.5e-52 208.4 159 60.4
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 7.1e-52 208.0 208 51.4
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.5e-51 205.7 214 50.5
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 4.6e-51 205.3 203 52.2
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.0e-50 204.1 149 61.7
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.0e-50 204.1 161 59.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.8e-50 203.4 190 55.3
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 3.9e-50 202.2 190 53.2
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 3.9e-50 202.2 149 61.7
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 6.7e-50 201.4 177 54.8
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.5e-49 200.3 178 53.9
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 1.5e-49 200.3 155 60.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.9e-49 199.9 186 53.8
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.5e-49 199.5 213 47.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.5e-49 199.5 147 62.6
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 4.3e-49 198.7 186 53.2
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.6e-48 196.8 177 53.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.6e-48 196.8 152 57.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 6.2e-48 194.9 208 46.6
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.8e-47 193.4 189 50.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.3e-47 191.8 184 53.3
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 6.9e-47 191.4 189 50.3
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 1.5e-46 190.3 157 56.1
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 3.4e-46 189.1 206 47.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 4.5e-46 188.7 189 48.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 4.5e-46 188.7 171 53.8
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 4.5e-46 188.7 187 51.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.3e-45 187.2 151 57.0
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 3.8e-45 185.7 201 47.8
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 8.4e-45 184.5 221 43.9
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.1e-44 184.1 190 48.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 7.1e-44 181.4 162 52.5
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.1e-43 179.9 204 44.6
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.1e-43 179.9 171 51.5
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 2.7e-43 179.5 161 52.2
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.1e-43 178.3 151 56.3
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 6.1e-43 178.3 149 53.0
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 6.1e-43 178.3 221 42.1
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.3e-42 177.2 148 54.7
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 1.3e-42 177.2 187 48.1
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.8e-42 176.8 153 54.2
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.8e-42 176.8 146 56.2
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 3.0e-42 176.0 162 51.9
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 5.1e-42 175.3 203 47.3
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 5.1e-42 175.3 169 49.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 1.1e-41 174.1 145 55.2
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.1e-41 174.1 146 56.2
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.5e-41 173.7 135 57.8
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.5e-41 173.7 153 54.9
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.9e-41 173.3 192 46.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 3.3e-41 172.6 155 52.3
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 4.3e-41 172.2 220 43.2
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-40 170.2 160 51.2
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-40 170.2 160 51.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 2.2e-40 169.9 203 46.8
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.8e-40 168.7 160 50.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.1e-39 167.5 154 51.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.4e-39 167.2 172 49.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.8e-39 166.8 177 48.6
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.1e-39 166.0 179 45.3
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 2.0e-38 163.3 160 49.4
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 4.5e-38 162.2 203 45.3
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 4.5e-38 162.2 165 53.3
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.5e-36 156.4 198 45.5
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 3.2e-36 156.0 135 54.1
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 7.2e-36 154.8 150 51.3
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 5.7e-33 145.2 154 48.7
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.3e-32 144.1 149 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 2.2e-32 143.3 184 41.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.8e-32 142.9 149 50.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 4.8e-32 142.1 188 38.8
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.1e-31 141.0 149 49.0
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 5.3e-31 138.7 145 44.1
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 6.9e-31 138.3 156 42.9
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.9e-31 138.3 171 45.0
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.1e-27 126.7 169 44.4
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.7e-27 126.3 187 38.5
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.9e-26 122.5 211 34.1
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.5e-21 105.1 98 51.0
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 6.5e-21 105.1 76 59.2
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 8.5e-21 104.8 193 39.4
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 4.7e-19 99.0 82 51.2
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.3e-18 96.7 79 54.4
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.6e-14 83.2 165 33.9
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 8.5e-13 78.2 159 33.3
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 7.2e-12 75.1 75 46.7
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.4e-12 74.7 75 46.7
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 2.6e-09 66.6 82 37.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.4e-09 65.9 63 47.6
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.4e-07 58.9 107 29.9
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.7e-06 56.6 42 64.3
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 2.7e-06 56.6 31 74.2


User provided reference genes

Program Settings