Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 6.9e-53 210.3 101 100.0
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.5e-41 171.4 89 92.1
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-40 169.1 89 91.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.8e-40 169.1 87 92.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-40 169.1 89 91.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-34 149.8 85 81.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.4e-34 149.4 85 80.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.4e-34 149.4 85 81.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-34 148.7 85 80.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 7.2e-34 147.1 85 77.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.6e-33 144.4 85 75.3
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 4.6e-33 144.4 85 75.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.6e-33 144.4 85 77.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 6.1e-33 144.1 85 75.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 7.9e-33 143.7 79 86.1
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.8e-32 142.5 85 75.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 7.4e-31 137.1 85 72.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.1e-29 133.3 85 70.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-28 129.4 85 70.6
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.5e-28 127.9 85 67.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.5e-28 127.9 85 67.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 4.5e-28 127.9 85 67.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.0e-27 126.7 85 65.9
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.7e-27 125.9 85 67.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.2e-27 125.6 85 67.1
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.2e-27 125.6 85 67.1
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.9e-27 125.2 85 65.9
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.9e-27 125.2 85 63.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.8e-27 124.8 85 64.7
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 6.5e-27 124.0 85 65.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.9e-26 122.5 85 63.5
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.9e-26 122.5 85 63.5
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.9e-26 122.5 85 64.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.9e-26 122.5 79 69.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.5e-26 122.1 85 65.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.2e-26 121.7 85 64.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.2e-26 121.7 85 64.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.2e-26 121.7 85 64.7
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 3.2e-26 121.7 85 63.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 3.2e-26 121.7 85 63.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.2e-26 121.3 79 67.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 4.2e-26 121.3 85 61.2
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.2e-26 121.3 85 62.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.5e-26 120.9 85 63.5
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.5e-26 120.9 85 64.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.2e-26 120.6 85 64.7
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.2e-26 120.6 85 64.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.2e-26 120.6 85 64.7
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 63.5
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 63.5
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 63.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 63.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 64.7
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 9.4e-26 120.2 85 63.5
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.2e-25 119.8 86 62.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-25 119.8 85 63.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-25 119.8 85 63.5
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.2e-25 119.8 85 63.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-25 119.4 85 63.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.6e-25 119.4 85 63.5
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 63.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 62.4
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 61.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 64.7
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 64.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 63.5
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 63.5
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.1e-25 119.0 85 63.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.7e-25 118.6 85 63.5
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.7e-25 118.6 85 63.5
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.7e-25 118.6 85 62.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.6e-25 118.2 85 61.2
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.6e-25 118.2 82 65.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.6e-25 118.2 85 62.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.6e-25 118.2 85 63.5
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.6e-25 118.2 85 62.4
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.6e-25 118.2 85 63.5
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 4.6e-25 117.9 85 63.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 4.6e-25 117.9 85 61.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 4.6e-25 117.9 85 63.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.1e-25 117.5 85 62.4
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 6.1e-25 117.5 85 63.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.1e-25 117.5 85 63.5
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 7.9e-25 117.1 85 61.2
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.9e-25 117.1 85 61.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.9e-25 117.1 85 61.2
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 7.9e-25 117.1 85 62.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.4e-24 116.3 85 61.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.4e-24 116.3 85 62.4
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.4e-24 116.3 85 62.4
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.8e-24 115.9 91 59.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.8e-24 115.9 85 63.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.8e-24 115.9 85 62.4
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.3e-24 115.5 85 63.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.3e-24 115.5 85 61.2
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.3e-24 115.5 85 62.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.3e-24 115.5 85 58.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.0e-24 115.2 85 62.4
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.0e-24 115.2 85 61.2
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.0e-24 115.2 85 62.4
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.0e-24 115.2 85 60.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.0e-24 115.2 85 60.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 3.9e-24 114.8 85 60.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.7e-24 114.0 85 58.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 6.7e-24 114.0 85 61.2
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 8.8e-24 113.6 79 65.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.1e-23 113.2 85 61.2
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.1e-23 113.2 85 61.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.1e-23 113.2 85 60.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-23 112.8 85 58.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.3e-23 111.7 85 61.2
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.3e-23 111.7 85 58.8
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-23 111.3 59 88.1
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.7e-23 110.2 55 89.1
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 9.7e-23 110.2 55 89.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.3e-22 109.8 85 60.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.2e-22 109.0 85 54.1
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.8e-22 107.8 88 59.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.3e-22 107.5 85 56.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.2e-22 107.1 85 57.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-21 106.7 75 70.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-21 106.7 98 53.1
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.1e-21 106.7 85 57.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.4e-21 106.3 85 55.3
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.1e-21 104.8 78 61.5
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 9.1e-21 103.6 78 61.5
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-20 103.2 85 55.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.0e-20 102.4 79 60.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 4.5e-20 101.3 76 59.2
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 5.9e-20 100.9 53 86.8
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-19 100.1 88 54.5
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.7e-19 99.4 59 71.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.5e-18 95.5 83 55.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 5.5e-18 94.4 89 52.8
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 7.9e-17 90.5 79 43.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.9e-16 88.2 98 49.0
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.4e-13 79.7 79 43.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.8e-13 79.3 79 45.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.3e-11 73.2 85 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.8e-08 62.8 58 43.1
BcaB08g35578 Brassica carinata HOM05D004336 ORTHO05D005367 1.5e-07 59.7 34 85.3
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.7e-07 57.8 55 52.7


User provided reference genes

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