Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-44 182.6 106 100.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 2.4e-40 168.7 106 87.7
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 5.0e-38 161.0 106 85.8
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 5.6e-37 157.5 107 82.2
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 2.8e-36 155.2 106 84.0
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 3.4e-34 148.3 106 76.4
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 3.2e-32 141.7 112 72.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 9.5e-29 130.2 106 64.2
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 5.8e-26 120.9 105 63.8
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 5.8e-26 120.9 89 73.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 9.8e-26 120.2 103 63.1
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.3e-25 119.8 105 63.8
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.9e-25 117.9 103 62.1
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 2.4e-24 115.5 74 89.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.2e-23 113.2 103 62.1
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-23 112.8 74 87.8
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 1.6e-23 112.8 74 87.8
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.7e-22 109.4 102 60.8
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 6.6e-22 107.5 74 81.1
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 8.6e-22 107.1 76 77.6
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.1e-21 106.7 74 81.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 5.6e-21 104.4 105 55.2
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 5.6e-21 104.4 105 55.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 5.6e-21 104.4 105 58.1
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 2.8e-20 102.1 105 55.2
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 8.1e-20 100.5 104 62.5
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.1e-16 90.1 100 48.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.9e-16 89.4 103 44.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.1e-16 88.2 105 50.5
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 9.2e-16 87.0 103 42.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 5.1e-14 81.3 92 52.2
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 5.1e-14 81.3 92 52.2
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 2.5e-13 79.0 98 44.9
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.3e-13 78.2 108 44.4
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 7.3e-13 77.4 95 42.1
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 2.3e-11 72.4 55 72.7
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 5.2e-11 71.2 109 42.2
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 6.8e-11 70.9 115 39.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 6.8e-11 70.9 111 38.7
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.6e-10 68.9 100 42.0
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 3.4e-10 68.6 116 38.8
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 3.4e-10 68.6 104 39.4
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 5.8e-10 67.8 100 37.0
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 2.9e-09 65.5 49 79.6
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 4.9e-09 64.7 104 36.5
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 6.4e-09 64.3 108 38.0
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.2e-08 62.0 100 35.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 7.1e-08 60.8 102 35.3
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 9.2e-08 60.5 108 37.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.2e-07 60.1 108 35.2
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.6e-07 59.7 116 37.9
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.6e-07 59.7 108 34.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 2.1e-07 59.3 101 36.6
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.5e-07 58.5 103 33.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 3.5e-07 58.5 108 34.3
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 4.6e-07 58.2 108 36.1
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 6.0e-07 57.8 108 36.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 7.8e-07 57.4 103 37.9
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 7.8e-07 57.4 102 32.4
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 7.8e-07 57.4 115 35.7
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.0e-06 57.0 108 34.3
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.3e-06 56.6 115 33.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.3e-06 56.6 109 33.9
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.3e-06 55.8 109 33.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.0e-06 55.5 101 33.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 3.9e-06 55.1 101 34.7
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.9e-06 55.1 108 33.3
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 3.9e-06 55.1 108 34.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 5.1e-06 54.7 109 35.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.1e-06 54.7 108 32.4
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 5.1e-06 54.7 101 34.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 5.1e-06 54.7 108 33.3
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 6.6e-06 54.3 108 32.4
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 8.6e-06 53.9 108 32.4


User provided reference genes

Program Settings