Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.2e-144 516.5 270 100.0
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 8.7e-95 350.9 311 68.5
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 1.3e-90 337.0 319 66.1
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.3e-90 337.0 319 66.1
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.2e-88 330.5 307 65.5
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.6e-88 330.1 309 65.0
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.6e-88 330.1 309 65.0
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 3.0e-87 325.9 310 65.2
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 6.3e-85 318.2 302 66.9
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 2.1e-80 303.1 310 63.2
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 4.8e-77 292.0 313 60.7
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 9.1e-76 287.7 311 60.8
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 1.4e-73 280.4 308 61.4
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 8.8e-63 244.6 254 62.2
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 7.2e-49 198.4 343 44.6
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 2.6e-46 189.9 318 45.9
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 1.7e-34 150.6 332 38.6
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 1.7e-34 150.6 332 38.6
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.3e-33 146.4 332 37.3
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 6.2e-32 142.1 194 52.1
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.0e-31 141.4 342 37.4
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 4.0e-31 139.4 339 39.8
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 8.9e-31 138.3 343 37.3
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-30 137.9 337 38.3
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-30 137.9 342 37.1
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.2e-30 137.9 331 38.7
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 2.0e-30 137.1 337 38.6
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.6e-30 136.7 295 43.7
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 2.6e-30 136.7 339 37.8
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 5.8e-30 135.6 340 37.1
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 1.3e-29 134.4 340 36.8
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 1.7e-29 134.0 310 39.0
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 6.4e-29 132.1 334 36.8
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 4.1e-28 129.4 345 37.4
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 4.1e-28 129.4 369 34.4
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.6e-27 127.5 204 47.5
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 2.0e-27 127.1 193 47.2
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 2.7e-27 126.7 198 47.0
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 3.5e-27 126.3 210 48.6
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 4.6e-27 125.9 336 37.2
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 6.0e-27 125.6 348 35.3
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 6.0e-27 125.6 346 37.6
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 7.8e-27 125.2 325 36.9
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 1.0e-26 124.8 327 35.5
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.3e-26 124.4 347 36.3
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.3e-26 124.4 198 46.0
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 1.7e-26 124.0 311 37.0
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 2.3e-26 123.6 342 38.0
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 8.6e-26 121.7 322 37.6
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 1.5e-25 120.9 63 95.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 4.3e-25 119.4 195 48.7
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 4.3e-25 119.4 337 35.3
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 7.3e-25 118.6 360 36.1
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 7.3e-25 118.6 308 37.7
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 9.5e-25 118.2 338 36.1
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.6e-24 117.5 355 34.9
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 1.6e-24 117.5 346 34.4
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 3.6e-24 116.3 296 36.1
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 4.7e-24 115.9 187 49.2
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.2e-24 115.5 314 36.6
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 4.0e-23 112.8 295 37.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 5.2e-23 112.5 192 47.9
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 5.2e-23 112.5 196 43.9
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 2.6e-22 110.2 205 44.9
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.4e-22 109.8 317 36.6
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 5.8e-22 109.0 241 40.2
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 5.8e-22 109.0 241 40.2
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 9.8e-22 108.2 194 42.8
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 9.8e-22 108.2 315 35.2
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.7e-21 107.5 323 35.6
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 3.7e-21 106.3 319 36.1
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 6.4e-21 105.5 180 43.9
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 6.4e-21 105.5 231 40.3
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 8.3e-21 105.1 186 45.2
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.1e-20 104.8 304 38.8
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 1.1e-20 104.8 187 44.9
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.4e-20 103.6 271 37.6
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 9.2e-20 101.7 322 34.5
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 9.2e-20 101.7 308 35.7
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 1.3e-18 97.8 198 41.4
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 2.5e-17 93.6 190 40.5
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 2.5e-17 93.6 284 33.8
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 4.3e-17 92.8 189 41.3
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 4.0e-15 86.3 308 32.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 2.0e-14 84.0 320 30.6
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 4.4e-14 82.8 131 48.9
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.4e-14 82.8 203 36.9
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 4.4e-14 82.8 268 32.5
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 2.2e-13 80.5 229 36.7
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 2.9e-13 80.1 269 34.2
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 2.9e-13 80.1 248 35.1
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 6.4e-13 79.0 242 36.4
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 5.4e-12 75.9 249 33.7
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 9.2e-12 75.1 282 32.3
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.6e-11 74.3 203 33.0
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.0e-10 71.6 310 30.6
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.5e-09 67.0 317 29.7
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 5.6e-09 65.9 292 29.5
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 1.2e-08 64.7 159 40.9
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 2.8e-08 63.5 57 61.4
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 3.6e-08 63.2 215 34.0
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 5.8e-06 55.8 319 30.1


User provided reference genes

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