Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 0.0e+00 1189.1 604 100.0
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 3.7e-178 629.0 395 81.8
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 5.0e-175 618.6 391 81.6
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 5.0e-175 618.6 395 81.3
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 5.0e-175 618.6 391 81.6
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 5.0e-175 618.6 395 81.3
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.9e-174 616.7 391 81.3
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 2.1e-173 613.2 401 79.3
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 3.6e-173 612.5 389 81.0
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.5e-171 607.1 398 79.4
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 5.7e-171 605.1 401 78.6
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 9.8e-171 604.4 401 78.3
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 9.2e-169 597.8 396 78.3
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 4.3e-150 535.8 415 67.5
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 2.1e-136 490.3 432 63.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 3.0e-127 459.9 412 60.0
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 3.0e-127 459.9 425 58.8
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.2e-123 448.0 409 59.9
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.2e-122 443.7 412 57.0
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 3.8e-122 443.0 413 58.1
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 4.9e-122 442.6 399 59.4
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.9e-121 440.7 414 58.7
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 7.1e-121 438.7 393 59.8
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.6e-120 437.6 383 61.4
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.3e-119 433.7 399 57.4
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 6.7e-119 432.2 399 57.9
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.1e-118 431.4 380 60.3
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 1.5e-118 431.0 390 59.0
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.3e-117 427.9 376 61.2
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 2.8e-117 426.8 381 59.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.8e-117 426.8 388 59.3
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 3.7e-117 426.4 397 57.4
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 6.2e-117 425.6 393 59.5
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.1e-117 425.2 393 57.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.1e-116 424.9 421 55.6
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.4e-116 424.5 424 55.2
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.4e-116 423.7 347 62.2
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 3.1e-116 423.3 406 56.7
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 3.1e-116 423.3 411 57.2
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 4.0e-116 422.9 426 56.1
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 6.9e-116 422.2 405 57.0
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 6.9e-116 422.2 422 55.9
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 6.9e-116 422.2 394 58.1
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 6.9e-116 422.2 405 56.3
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 9.0e-116 421.8 392 58.4
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.5e-115 421.0 393 57.8
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 2.0e-115 420.6 424 55.2
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.6e-115 420.2 366 59.6
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 5.8e-115 419.1 358 63.4
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 7.6e-115 418.7 439 53.5
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.7e-114 417.5 396 57.3
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 1.7e-114 417.5 397 55.7
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.2e-114 417.2 373 57.9
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.4e-113 414.5 385 57.4
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 1.9e-113 414.1 409 57.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.5e-113 413.7 421 54.9
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 3.2e-113 413.3 369 59.1
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 4.2e-113 412.9 415 55.4
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 7.1e-113 412.1 421 54.9
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 9.3e-113 411.8 381 59.1
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.2e-112 411.4 402 56.2
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.6e-112 411.0 428 53.7
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 2.1e-112 410.6 402 56.2
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.3e-111 407.9 363 59.5
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.3e-111 407.9 371 59.6
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 3.9e-111 406.4 386 57.3
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 8.7e-111 405.2 426 52.6
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.1e-110 404.8 428 51.9
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.1e-110 404.8 428 51.6
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.9e-110 404.1 386 56.7
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 2.5e-110 403.7 355 59.4
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 7.4e-110 402.1 386 56.5
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.1e-109 400.6 367 58.9
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 3.7e-109 399.8 361 59.8
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 8.2e-109 398.7 358 58.9
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 3.1e-108 396.7 372 57.3
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 5.3e-108 396.0 353 59.2
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.0e-106 391.7 416 53.4
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.7e-106 391.0 357 59.4
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 1.7e-106 391.0 359 59.1
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 4.9e-106 389.4 353 58.9
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 1.1e-105 388.3 361 57.6
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 1.1e-105 388.3 364 57.4
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.4e-105 387.9 362 56.9
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 4.2e-105 386.3 359 57.4
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 4.2e-105 386.3 421 49.6
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 5.5e-105 386.0 395 55.2
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 2.1e-104 384.0 397 53.4
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.0e-103 381.7 361 57.1
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.8e-103 380.9 397 53.1
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.3e-103 380.6 346 58.7
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.5e-102 377.1 400 53.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 7.4e-102 375.6 335 60.3
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 9.7e-102 375.2 351 56.1
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 9.7e-102 375.2 357 57.4
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.7e-101 373.2 441 49.0
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.2e-99 368.2 391 54.0
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.4e-97 361.3 306 64.4
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.9e-97 360.9 350 54.3
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.5e-94 351.3 376 53.2
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.1e-89 335.1 360 53.3
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 1.0e-79 302.0 280 57.9
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.4e-70 270.4 349 47.3
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.2e-67 261.9 361 44.3
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.9e-67 259.6 369 43.6
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 5.9e-67 259.6 369 43.6
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.7e-66 258.1 167 78.4
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 2.9e-66 257.3 386 41.7
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.6e-64 251.5 243 55.1
BcaB06g26620 Brassica carinata HOM05D009722 ORTHO05D000411 1.8e-55 221.5 144 84.7
BcaB04g17505 Brassica carinata HOM05D000496 ORTHO05D000411 1.9e-36 158.3 131 71.8
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.5e-35 154.1 124 64.5
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 3.0e-34 151.0 117 65.0
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 2.5e-33 147.9 353 32.6
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 9.5e-33 146.0 155 51.6
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 2.4e-28 131.3 303 32.3
BcaB01g01934 Brassica carinata HOM05D000496 ORTHO05D000411 1.3e-26 125.6 138 57.2
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 6.4e-21 106.7 88 61.4
BcaB02g06959 Brassica carinata HOM05D000496 ORTHO05D000411 1.3e-18 99.0 134 51.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 9.6e-17 92.8 190 35.3
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 4.0e-15 87.4 141 39.0
BolC3t20480H Brassica oleracea HOM05D009722 ORTHO05D000411 5.8e-14 83.6 159 43.4
C07p05370 Brassica napus HOM05D009722 ORTHO05D027247 7.6e-14 83.2 145 47.6
BolC7t40938H Brassica oleracea HOM05D009722 ORTHO05D027247 1.3e-13 82.4 145 47.6
BcaC08g46291 Brassica carinata HOM05D000496 ORTHO05D027247 6.4e-13 80.1 136 47.1
BcaB04g17801 Brassica carinata HOM05D009722 ORTHO05D000411 8.4e-13 79.7 151 43.0
BcaC06g36324 Brassica carinata HOM05D000496 ORTHO05D027247 3.2e-12 77.8 126 48.4
BcaB06g27750 Brassica carinata HOM05D000496 ORTHO05D000411 9.3e-12 76.3 130 46.9
BcaC09g49495 Brassica carinata HOM05D009722 ORTHO05D000411 1.2e-11 75.9 138 42.8
BcaB05g22903 Brassica carinata HOM05D009722 ORTHO05D000411 5.1e-10 70.5 98 48.0
BcaB04g17415 Brassica carinata HOM05D000496 ORTHO05D000411 8.7e-10 69.7 145 42.1
BcaB01g01299 Brassica carinata HOM05D000496 ORTHO05D000411 7.3e-09 66.6 146 43.2
BcaC08g43695 Brassica carinata HOM05D009722 ORTHO05D000411 9.6e-09 66.2 184 34.2
C03p82040 Brassica napus HOM05D000496 ORTHO05D000411 9.6e-09 66.2 98 49.0
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 9.6e-09 66.2 91 47.3
BcaC01g02116 Brassica carinata HOM05D009722 ORTHO05D032209 4.8e-08 63.9 81 54.3
C03p68410 Brassica napus HOM05D009722 ORTHO05D032209 4.8e-08 63.9 81 54.3
BolC3t19076H Brassica oleracea HOM05D009722 ORTHO05D032209 4.8e-08 63.9 81 54.3
BcaC09g49494 Brassica carinata HOM05D009722 ORTHO05D000411 3.1e-07 61.2 94 45.7
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 3.1e-07 61.2 224 25.4
A01p25350 Brassica napus HOM05D009722 ORTHO05D099801 4.0e-07 60.8 68 48.5
BcaC07g37521 Brassica carinata HOM05D009722 ORTHO05D031879 9.0e-07 59.7 132 43.2
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.4e-06 57.8 91 42.9
BcaC05g29418 Brassica carinata HOM05D009722 ORTHO05D095791 5.8e-06 57.0 121 45.5
BraA03t12622Z Brassica rapa HOM05D010266 ORTHO05D016719 9.9e-06 56.2 63 50.8


User provided reference genes

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