Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 4.3e-99 364.8 197 100.0
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 4.3e-99 364.8 197 100.0
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 4.3e-99 364.8 197 100.0
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 4.3e-99 364.8 197 100.0
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 2.1e-98 362.5 197 99.5
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 2.1e-98 362.5 197 99.5
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 4.1e-94 348.2 196 95.4
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 3.4e-88 328.6 196 90.3
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 1.7e-87 326.2 196 89.8
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 4.1e-86 321.6 196 87.2
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 2.7e-85 318.9 196 87.2
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 3.9e-84 315.1 196 85.2
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 1.1e-83 313.5 196 85.2
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 8.6e-76 287.3 196 79.6
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 1.2e-74 283.5 195 79.0
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 3.6e-74 282.0 198 76.8
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 3.6e-74 282.0 198 76.8
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 3.6e-74 282.0 197 77.2
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 6.2e-74 281.2 199 77.9
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 6.2e-74 281.2 190 76.8
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 2.4e-73 279.3 197 77.2
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 3.1e-73 278.9 198 76.3
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 6.8e-73 277.7 196 76.0
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 6.8e-73 277.7 198 74.7
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 6.8e-73 277.7 195 74.4
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 8.9e-73 277.3 198 76.3
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 8.9e-73 277.3 196 75.5
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.2e-72 276.9 199 75.4
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 1.2e-72 276.9 199 74.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 1.5e-72 276.6 190 77.4
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 2.6e-72 275.8 200 76.5
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 2.6e-72 275.8 198 76.3
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 4.4e-72 275.0 199 76.4
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 5.8e-72 274.6 199 75.9
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 7.6e-72 274.2 195 75.4
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 1.3e-71 273.5 200 75.5
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 1.7e-71 273.1 197 73.6
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 1.7e-71 273.1 196 75.0
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 3.8e-71 271.9 194 74.7
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 4.9e-71 271.6 199 73.9
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 6.4e-71 271.2 199 74.4
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 8.4e-71 270.8 198 74.7
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 8.4e-71 270.8 198 74.7
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 8.4e-71 270.8 198 74.7
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 8.4e-71 270.8 192 73.4
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 1.1e-70 270.4 194 74.2
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 1.1e-70 270.4 197 72.1
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 1.1e-70 270.4 192 73.4
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 1.9e-70 269.6 196 76.5
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 1.9e-70 269.6 197 75.6
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 2.4e-70 269.2 198 74.2
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 2.4e-70 269.2 198 74.2
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.4e-70 269.2 194 73.7
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 2.4e-70 269.2 198 74.2
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 4.2e-70 268.5 196 75.5
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 4.2e-70 268.5 192 73.4
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 4.2e-70 268.5 197 73.6
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 5.4e-70 268.1 192 75.0
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 7.1e-70 267.7 197 74.1
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 9.3e-70 267.3 196 74.0
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 1.2e-69 266.9 198 73.2
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 1.2e-69 266.9 197 73.1
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 1.6e-69 266.5 202 71.8
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 2.1e-69 266.2 202 72.8
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 2.1e-69 266.2 182 75.8
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.7e-69 265.8 192 74.0
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 3.5e-69 265.4 197 74.6
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 3.5e-69 265.4 199 72.9
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.6e-69 265.0 197 74.1
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 4.6e-69 265.0 196 73.5
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 1.7e-68 263.1 196 71.4
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 1.7e-68 263.1 159 84.3
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 2.3e-68 262.7 192 72.4
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 3.0e-68 262.3 197 73.6
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 3.9e-68 261.9 212 70.3
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 1.9e-67 259.6 197 72.6
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 2.5e-67 259.2 196 71.9
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 3.3e-67 258.8 198 72.7
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 5.6e-67 258.1 197 72.6
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 7.3e-67 257.7 199 72.4
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 7.3e-67 257.7 199 70.4
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 1.6e-66 256.5 198 69.2
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 2.8e-66 255.8 197 70.6
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 4.8e-66 255.0 159 82.4
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 4.8e-66 255.0 197 70.6
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 4.8e-66 255.0 197 71.1
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 4.8e-66 255.0 197 72.1
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 1.1e-65 253.8 200 70.0
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 3.1e-65 252.3 197 67.5
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 1.2e-64 250.4 197 70.6
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 1.5e-64 250.0 197 70.1
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 2.6e-64 249.2 148 84.5
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 3.4e-64 248.8 197 69.5
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 1.3e-63 246.9 198 67.2
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 8.4e-63 244.2 197 67.5
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 5.4e-62 241.5 191 69.6
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 6.6e-60 234.6 170 70.0
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 3.6e-58 228.8 148 82.4
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 3.8e-47 192.2 166 57.2
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 8.4e-47 191.0 161 57.8
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 4.3e-43 178.7 142 71.1
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 1.1e-41 174.1 105 84.8
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 4.5e-40 168.7 168 53.0
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.3e-39 167.2 158 55.1
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.3e-39 167.2 158 55.1
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 2.2e-39 166.4 102 88.2
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.8e-39 165.6 195 49.2
arahy.Tifrunner.gnm1.ann1.151HRH Arachis hypogaea HOM05D006252 ORTHO05D007909 1.4e-38 163.7 103 81.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 1.4e-38 163.7 94 89.4
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 3.2e-38 162.5 168 51.8
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 9.3e-38 161.0 171 50.9
arahy.Tifrunner.gnm1.ann1.RBN82M Arachis hypogaea HOM05D006252 ORTHO05D007909 3.3e-35 152.5 103 77.7
Actinidia24149 Actinidia chinensis HOM05D006252 ORTHO05D007909 5.0e-31 138.7 114 67.5
arahy.Tifrunner.gnm1.ann1.EI3IVH Arachis hypogaea HOM05D006252 ORTHO05D007909 2.1e-29 133.3 90 77.8
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 2.8e-26 122.9 88 69.3
arahy.Tifrunner.gnm1.ann1.8D185T Arachis hypogaea HOM05D006252 ORTHO05D005826 1.5e-24 117.1 71 83.1
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 7.9e-21 104.8 158 34.8
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.4e-20 104.0 161 36.6
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 6.7e-20 101.7 93 62.4
arahy.Tifrunner.gnm1.ann1.KIT0HG Arachis hypogaea HOM05D006252 ORTHO05D007909 8.2e-18 94.7 88 60.2
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 1.8e-17 93.6 93 58.1
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 3.1e-17 92.8 171 32.2
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 8.0e-13 78.2 104 44.2
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 8.8e-12 74.7 156 32.1
arahy.Tifrunner.gnm1.ann1.TR51Z4 Arachis hypogaea HOM05D006252 ORTHO05D007909 4.8e-10 68.9 44 68.2
MELO3C029084.2 Cucumis melo HOM05D006252 ORTHO05D007909 1.4e-09 67.4 43 69.8
Zm00001eb258210 Zea mays HOM05D000274 ORTHO05D006772 2.6e-08 63.2 76 47.4
arahy.Tifrunner.gnm1.ann1.LGS4T1 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.9e-07 59.7 48 64.6


User provided reference genes

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