Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-68 263.1 132 100.0
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 8.4e-51 203.8 134 81.3
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.1e-50 203.4 134 80.6
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.5e-50 201.1 134 81.3
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.5e-50 201.1 134 81.3
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.1e-50 200.7 134 80.6
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.1e-50 200.7 134 80.6
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.1e-50 200.7 134 80.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 134 79.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 3.5e-49 198.4 134 79.9
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.0e-49 197.6 134 79.1
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 6.7e-48 194.1 134 78.4
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.6e-46 189.5 134 78.4
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 1.2e-44 183.3 134 76.1
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.2e-44 183.3 134 76.9
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-43 179.5 134 75.4
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 8.4e-43 177.2 131 76.3
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.1e-40 167.9 123 74.0
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.9e-39 166.0 121 72.7
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.5e-39 165.6 122 72.1
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 3.3e-39 165.2 132 65.2
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 5.7e-39 164.5 124 68.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.4e-39 164.1 124 68.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 9.7e-39 163.7 124 70.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.6e-38 162.9 121 71.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.6e-38 162.9 121 71.9
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.2e-38 162.5 120 71.7
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 2.8e-38 162.2 124 68.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.8e-38 162.2 120 71.7
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.8e-38 162.2 121 69.4
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.8e-38 162.2 123 70.7
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 3.7e-38 161.8 121 68.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 4.8e-38 161.4 120 70.0
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 4.8e-38 161.4 121 71.1
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 6.3e-38 161.0 126 67.5
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 8.2e-38 160.6 124 67.7
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.1e-37 160.2 123 66.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.1e-37 160.2 124 66.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.1e-37 160.2 124 66.1
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.4e-37 159.8 121 68.6
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-37 159.8 124 66.9
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.4e-37 159.8 124 66.1
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.4e-37 159.1 117 70.9
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.1e-37 158.3 137 65.7
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.1e-37 158.3 124 65.3
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.1e-37 158.3 117 70.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 4.1e-37 158.3 120 69.2
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 5.3e-37 157.9 127 67.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.9e-37 157.5 121 67.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 9.0e-37 157.1 117 71.8
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.5e-36 156.4 119 68.1
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.0e-36 156.0 117 70.1
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-36 155.6 121 66.9
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.6e-36 155.6 125 63.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.4e-36 155.2 133 63.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 4.5e-36 154.8 121 66.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 5.9e-36 154.5 117 69.2
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 5.9e-36 154.5 124 64.5
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.9e-36 154.5 124 64.5
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 7.6e-36 154.1 125 64.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.0e-35 153.7 144 57.6
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.0e-35 153.7 120 67.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.0e-35 153.7 125 64.0
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-35 153.3 121 66.1
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-35 152.5 121 64.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.2e-35 152.5 121 67.8
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.9e-35 152.1 121 66.1
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.8e-35 151.8 117 66.7
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 3.8e-35 151.8 124 62.9
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.8e-35 151.8 117 67.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 6.5e-35 151.0 119 64.7
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.5e-35 150.6 124 62.1
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.1e-34 150.2 121 62.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-34 150.2 124 63.7
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.4e-34 149.8 121 62.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.9e-34 149.4 124 62.9
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.2e-34 148.7 116 67.2
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 7.2e-34 147.5 120 63.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.2e-34 147.5 121 64.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-33 146.4 121 62.8
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-33 146.4 121 62.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.6e-33 146.4 110 67.3
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.6e-33 146.4 120 62.5
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.1e-33 146.0 121 62.0
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.7e-33 145.6 121 61.2
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.6e-33 145.2 118 62.7
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.6e-33 145.2 121 62.0
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 3.6e-33 145.2 116 63.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 4.6e-33 144.8 108 71.3
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 4.6e-33 144.8 121 62.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 7.9e-33 144.1 121 62.8
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.8e-32 142.9 123 60.2
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 3.0e-32 142.1 117 63.2
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-31 140.2 121 61.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-31 140.2 130 60.0
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.5e-31 139.8 105 68.6
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.5e-31 139.8 117 65.8
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.3e-31 138.7 124 59.7
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 5.7e-31 137.9 124 62.1
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 7.4e-31 137.5 134 64.2
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 7.4e-31 137.5 134 64.2
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 7.4e-31 137.5 120 62.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.8e-30 134.8 109 66.1
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.1e-29 133.7 108 65.7
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.8e-29 132.9 126 57.1
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 3.1e-29 132.1 121 61.2
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.9e-29 131.0 119 55.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.2e-28 130.2 120 59.2
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.4e-28 128.6 92 75.0
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.5e-28 128.3 99 70.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.2e-27 125.9 117 60.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.9e-27 125.6 122 59.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 3.8e-27 125.2 105 60.0
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 6.5e-27 124.4 123 56.1
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.4e-26 123.2 117 59.8
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.9e-26 122.9 113 59.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.2e-26 122.1 100 65.0
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 5.5e-26 121.3 98 67.3
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 7.2e-26 120.9 92 70.7
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 9.4e-26 120.6 98 67.3
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 3.6e-25 118.6 120 55.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-24 116.3 90 64.4
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.8e-24 116.3 120 53.3
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.7e-22 109.8 123 52.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 2.8e-22 109.0 123 52.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.3e-22 107.8 104 54.8
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 9.1e-21 104.0 119 50.4
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.5e-20 101.7 80 65.0
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.0e-19 100.5 97 53.6
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.0e-19 100.5 120 43.3
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.2e-19 99.4 84 63.1
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.2e-19 99.4 91 60.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-19 99.4 115 47.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.9e-19 99.0 105 51.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 2.9e-19 99.0 122 46.7
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 6.5e-19 97.8 93 55.9
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.2e-18 95.5 84 58.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.1e-17 92.8 112 45.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 2.7e-17 92.4 115 47.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.7e-17 91.7 112 48.2
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 8.0e-17 90.9 81 61.7
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.8e-16 89.7 117 43.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 3.0e-16 89.0 129 41.1
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.9e-16 88.6 131 39.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.9e-16 88.6 111 44.1
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 6.7e-16 87.8 84 54.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 8.8e-16 87.4 112 43.8
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 8.8e-16 87.4 112 43.8
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.1e-15 87.0 115 46.1
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 9.7e-15 84.0 60 68.3
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 2.8e-14 82.4 88 45.5
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 4.1e-13 78.6 104 45.2
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.1e-13 78.6 76 61.8
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.7e-11 73.2 53 64.2
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.8e-06 55.8 77 40.3
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 8.2e-06 54.3 101 38.6


User provided reference genes

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