Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23048 Brassica carinata HOM05D030801 ORTHO05D032709 5.3e-53 210.7 102 100.0
BcaB08g36359 Brassica carinata HOM05D030801 ORTHO05D032709 5.7e-39 164.1 79 98.7
A06p34850 Brassica napus HOM05D030801 ORTHO05D032709 2.0e-15 85.9 47 78.7
Sp3g20660 Schrenkiella parvula HOM05D000334 ORTHO05D000200 1.2e-09 66.6 66 57.6
Aa31LG8G9470 Aethionema arabicum HOM05D000334 ORTHO05D000200 4.7e-09 64.7 66 56.1
BcaB06g26418 Brassica carinata HOM05D000334 ORTHO05D000200 8.0e-09 63.9 64 57.8
Carub.0003s2313 Capsella rubella HOM05D000334 ORTHO05D000200 8.0e-09 63.9 71 53.5
AT3G22970 Arabidopsis thaliana HOM05D000334 ORTHO05D000200 2.3e-08 62.4 67 55.2
A05p25730 Brassica napus HOM05D000334 ORTHO05D000200 2.3e-08 62.4 63 57.1
BraA05t21455Z Brassica rapa HOM05D000334 ORTHO05D000200 2.3e-08 62.4 63 57.1
THA.LOC104808584 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 3.1e-08 62.0 66 54.5
Dinv44602 Davidia involucrata HOM05D000334 ORTHO05D000200 6.8e-08 60.8 71 53.5
THA.LOC104810650 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 6.8e-08 60.8 66 53.0
THA.LOC104822802 Tarenaya hassleriana HOM05D000334 ORTHO05D000200 6.8e-08 60.8 66 53.0
BcaC05g27998 Brassica carinata HOM05D000334 ORTHO05D000200 8.9e-08 60.5 63 55.6
C05p40070 Brassica napus HOM05D000334 ORTHO05D000200 8.9e-08 60.5 63 55.6
BolC5t32752H Brassica oleracea HOM05D000334 ORTHO05D000200 8.9e-08 60.5 63 55.6
CARHR098910 Cardamine hirsuta HOM05D000334 ORTHO05D000200 2.0e-07 59.3 66 56.1
AL3G37380 Arabidopsis lyrata HOM05D000334 ORTHO05D000200 2.6e-07 58.9 66 53.0
Duzib052G0575 Durio zibethinus HOM05D000334 ORTHO05D000200 2.6e-07 58.9 64 50.0
Hma1.2p1_0897F.1_g234250 Hydrangea macrophylla HOM05D000334 ORTHO05D000200 2.6e-07 58.9 62 53.2
SalBow2G2953 Salvia bowleyana HOM05D000334 ORTHO05D000200 3.4e-07 58.5 80 46.2
ECA240G4056 Erigeron canadensis HOM05D000334 ORTHO05D000200 4.4e-07 58.2 66 50.0
Dinv14068 Davidia involucrata HOM05D000334 ORTHO05D000200 5.8e-07 57.8 64 51.6
BcaC01g03404 Brassica carinata HOM05D000334 ORTHO05D000200 7.5e-07 57.4 59 57.6
A03p43100 Brassica napus HOM05D000334 ORTHO05D000200 7.5e-07 57.4 59 57.6
C03p52920 Brassica napus HOM05D000334 ORTHO05D000200 7.5e-07 57.4 59 57.6
C09p41190 Brassica napus HOM05D030801 ORTHO05D097807 7.5e-07 57.4 30 86.7
BolC3t17556H Brassica oleracea HOM05D000334 ORTHO05D000200 7.5e-07 57.4 59 57.6
BraA03t13452Z Brassica rapa HOM05D000334 ORTHO05D000200 7.5e-07 57.4 59 57.6
BcaC09g50133 Brassica carinata HOM05D000334 ORTHO05D000200 1.3e-06 56.6 64 51.6
A01p23050 Brassica napus HOM05D000334 ORTHO05D000200 1.3e-06 56.6 61 52.5
C01p28670 Brassica napus HOM05D000334 ORTHO05D000200 1.3e-06 56.6 64 51.6
BolC1t02794H Brassica oleracea HOM05D000334 ORTHO05D000200 1.3e-06 56.6 64 51.6
BraA01t02218Z Brassica rapa HOM05D000334 ORTHO05D000200 1.3e-06 56.6 61 52.5
Duzib212G0279 Durio zibethinus HOM05D000334 ORTHO05D000200 1.3e-06 56.6 64 48.4
COL.COLO4_13171 Corchorus olitorius HOM05D000334 ORTHO05D000200 1.7e-06 56.2 65 49.2
Sed0025279 Sechium edule HOM05D000334 ORTHO05D000200 1.7e-06 56.2 75 44.0
Actinidia05474 Actinidia chinensis HOM05D000334 ORTHO05D000200 2.9e-06 55.5 71 50.7
Lj6A651T64 Lonicera japonica HOM05D000334 ORTHO05D000200 2.9e-06 55.5 72 44.4
Actinidia40103 Actinidia chinensis HOM05D000334 ORTHO05D000200 3.7e-06 55.1 63 52.4
Thecc.04G241900 Theobroma cacao HOM05D000334 ORTHO05D000200 3.7e-06 55.1 65 47.7
TAR633G1506 Trochodendron aralioides HOM05D000334 ORTHO05D000200 3.7e-06 55.1 63 49.2
CSS0010805 Camellia sinensis var. sinensis HOM05D000334 ORTHO05D000200 4.9e-06 54.7 63 50.8
CsaV3_2G013270 Cucumis sativus L. HOM05D000334 ORTHO05D000200 4.9e-06 54.7 87 39.1
Lsat_1_v5_gn_3_123460 Lactuca sativa HOM05D000334 ORTHO05D000200 4.9e-06 54.7 68 51.5
Lj3C720T18 Lonicera japonica HOM05D000334 ORTHO05D000200 4.9e-06 54.7 61 52.5
PGR004G2560 Punica granatum HOM05D000334 ORTHO05D000200 4.9e-06 54.7 72 47.2
MSTRG.4078 Avicennia marina HOM05D000334 ORTHO05D000200 6.4e-06 54.3 71 46.5
ClCG06G006580 Citrullus lanatus HOM05D000334 ORTHO05D000200 6.4e-06 54.3 66 45.5
Nn3g19473 Nelumbo nucifera HOM05D000334 ORTHO05D000200 6.4e-06 54.3 78 43.6
GSVIVG01018080001 Vitis vinifera HOM05D000334 ORTHO05D000200 6.4e-06 54.3 59 54.2
BcaNung00351 Brassica carinata HOM05D000334 ORTHO05D000200 8.3e-06 53.9 68 47.1
MELO3C014271.2 Cucumis melo HOM05D000334 ORTHO05D000200 8.3e-06 53.9 87 39.1


User provided reference genes

Program Settings