Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23032 Brassica carinata HOM05D000581 ORTHO05D015961 6.3e-45 183.7 92 100.0
BcaC03g13702 Brassica carinata HOM05D000581 ORTHO05D015961 2.6e-38 161.8 116 75.9
A02p05760 Brassica napus HOM05D000581 ORTHO05D015961 2.6e-38 161.8 116 75.9
BNapus_Darmor_BZH_scaffold_38p02190 Brassica napus HOM05D000581 ORTHO05D015961 2.6e-38 161.8 116 75.9
BraA02t05528Z Brassica rapa HOM05D000581 ORTHO05D015961 2.6e-38 161.8 116 75.9
Carub.0006s1806 Capsella rubella HOM05D000581 ORTHO05D015961 1.2e-30 136.3 139 54.7
Thhalv10015244m.g Eutrema salsugineum HOM05D000581 ORTHO05D015961 4.4e-30 134.4 115 65.2
Sp6g24670 Schrenkiella parvula HOM05D000581 ORTHO05D015961 8.0e-24 113.6 115 56.5
Haze_15846 Corylus avellana HOM05D000581 ORTHO05D000412 4.7e-16 87.8 87 44.8
COL.COLO4_34753 Corchorus olitorius HOM05D000581 ORTHO05D000412 1.7e-13 79.3 135 34.8
Eucgr.F03077 Eucalyptus grandis HOM05D000581 ORTHO05D000412 1.7e-13 79.3 139 33.1
Zm00001eb283590 Zea mays HOM05D000581 ORTHO05D000412 2.2e-13 79.0 137 32.1
Glyma.13G354700 Glycine max HOM05D000581 ORTHO05D000412 1.1e-12 76.6 132 34.1
Lj3g0019320 Lotus japonicus HOM05D000581 ORTHO05D000412 1.1e-12 76.6 134 32.8
Glyma.15G019500 Glycine max HOM05D000581 ORTHO05D000412 1.8e-12 75.9 134 32.1
CARHR193180 Cardamine hirsuta HOM05D000581 ORTHO05D015961 2.4e-12 75.5 52 71.2
Duzib168G0687 Durio zibethinus HOM05D000581 ORTHO05D000412 2.4e-12 75.5 135 33.3
Sed0002879 Sechium edule HOM05D000581 ORTHO05D000412 3.1e-12 75.1 134 32.1
CsaV3_7G035290 Cucumis sativus L. HOM05D000581 ORTHO05D000412 4.1e-12 74.7 134 32.1
SGA_v2.0_scaffold66G22530 Striga asiatica HOM05D000581 ORTHO05D000412 5.4e-12 74.3 134 33.6
Ca_23261_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 7.0e-12 73.9 116 36.2
Sed0008552 Sechium edule HOM05D000581 ORTHO05D000412 7.0e-12 73.9 134 32.1
Phvul.005G166200 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 9.2e-12 73.6 134 32.1
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.2e-11 73.2 138 30.4
AT5G19710 Arabidopsis thaliana HOM05D000581 ORTHO05D015961 2.0e-11 72.4 103 45.6
CsaV3_3G023600 Cucumis sativus L. HOM05D000581 ORTHO05D000412 2.0e-11 72.4 134 31.3
CDE02G1795 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 2.7e-11 72.0 137 29.9
Gohir.A05G129200 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.7e-11 72.0 134 30.6
Medtr2g100880 Medicago truncatula HOM05D000581 ORTHO05D000412 2.7e-11 72.0 134 31.3
Medtr2g100900 Medicago truncatula HOM05D000581 ORTHO05D000412 2.7e-11 72.0 134 30.6
PGR102G0144 Punica granatum HOM05D000581 ORTHO05D000412 2.7e-11 72.0 134 29.9
SGA_v2.0_scaffold69G23320 Striga asiatica HOM05D000581 ORTHO05D000412 2.7e-11 72.0 139 30.9
TAR624G0712 Trochodendron aralioides HOM05D000581 ORTHO05D000412 2.7e-11 72.0 133 30.8
TAR626G1761 Trochodendron aralioides HOM05D000581 ORTHO05D000412 2.7e-11 72.0 139 30.9
VMungo1080G0477 Vigna mungo HOM05D000581 ORTHO05D000412 2.7e-11 72.0 134 31.3
MSTRG.4751 Avicennia marina HOM05D000581 ORTHO05D000412 3.5e-11 71.6 134 30.6
BcaB06g25729 Brassica carinata HOM05D000581 ORTHO05D000412 3.5e-11 71.6 132 31.1
Nn8g39077 Nelumbo nucifera HOM05D000581 ORTHO05D000412 3.5e-11 71.6 134 32.1
Sed0018850 Sechium edule HOM05D000581 ORTHO05D000412 3.5e-11 71.6 134 32.1
Hund07599 Selenicereus undatus HOM05D000581 ORTHO05D000412 3.5e-11 71.6 110 31.8
TPR.G6590 Trifolium pratense HOM05D000581 ORTHO05D000412 3.5e-11 71.6 134 31.3
BcaC01g03823 Brassica carinata HOM05D000581 ORTHO05D000412 5.9e-11 70.9 134 30.6
Glyma.07G015600 Glycine max HOM05D000581 ORTHO05D000412 1.0e-10 70.1 140 30.0
Aa31LG8G3500 Aethionema arabicum HOM05D000581 ORTHO05D000412 1.3e-10 69.7 134 29.9
MD09G1203100 Malus domestica HOM05D000581 ORTHO05D000412 1.3e-10 69.7 134 30.6
Phvul.010G145400 Phaseolus vulgaris HOM05D000581 ORTHO05D000412 1.3e-10 69.7 140 30.7
Thecc.09G101500 Theobroma cacao HOM05D000581 ORTHO05D000412 1.3e-10 69.7 140 32.9
TAR383G0489 Trochodendron aralioides HOM05D000581 ORTHO05D000412 1.3e-10 69.7 139 29.5
VMungo0331G1806 Vigna mungo HOM05D000581 ORTHO05D000412 1.3e-10 69.7 140 30.7
CARHR193190 Cardamine hirsuta HOM05D000581 ORTHO05D015961 1.7e-10 69.3 39 89.7
Ah.01g005810 Amaranthus hybridus HOM05D000581 ORTHO05D000412 2.9e-10 68.6 134 29.1
Glyma.08G201100 Glycine max HOM05D000581 ORTHO05D000412 2.9e-10 68.6 140 30.0
Carub.0003s1611 Capsella rubella HOM05D000581 ORTHO05D000412 3.8e-10 68.2 134 30.6
Os01g0743800 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 3.8e-10 68.2 134 29.1
Thhalv10021714m.g Eutrema salsugineum HOM05D000581 ORTHO05D000412 5.0e-10 67.8 134 29.9
THA.LOC104805933 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 5.0e-10 67.8 134 29.9
Cfa003650 Carpinus fangiana HOM05D000581 ORTHO05D000412 6.6e-10 67.4 134 29.1
Hma1.2p1_0430F.1_g151400 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 6.6e-10 67.4 134 29.9
Potri.001G189900 Populus trichocarpa HOM05D000581 ORTHO05D000412 6.6e-10 67.4 133 30.1
Thecc.09G101300 Theobroma cacao HOM05D000581 ORTHO05D000412 6.6e-10 67.4 139 30.2
MBI01_g10134_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 8.6e-10 67.0 134 29.1
RcHm_v2.0_Chr2g0140511 Rosa chinensis HOM05D000581 ORTHO05D000412 8.6e-10 67.0 134 31.3
GSVIVG01016986001 Vitis vinifera HOM05D000581 ORTHO05D000412 8.6e-10 67.0 134 29.1
Os05g0186100 Oryza sativa ssp. japonica HOM05D000581 ORTHO05D000412 1.1e-09 66.6 137 27.0
Prupe.3G059200 Prunus persica HOM05D000581 ORTHO05D000412 1.1e-09 66.6 134 31.3
AL3G29140 Arabidopsis lyrata HOM05D000581 ORTHO05D000412 1.5e-09 66.2 134 29.9
AT3G16360 Arabidopsis thaliana HOM05D000581 ORTHO05D000412 1.5e-09 66.2 134 29.9
Nn6g35321 Nelumbo nucifera HOM05D000581 ORTHO05D000412 1.5e-09 66.2 134 27.6
PSO210G5063 Papaver somniferum HOM05D000581 ORTHO05D000412 1.5e-09 66.2 134 28.4
THA.LOC104817959 Tarenaya hassleriana HOM05D000581 ORTHO05D000412 1.5e-09 66.2 134 28.4
BcaB04g18897 Brassica carinata HOM05D000581 ORTHO05D000412 1.9e-09 65.9 134 29.1
PSO210G0449 Papaver somniferum HOM05D000581 ORTHO05D000412 1.9e-09 65.9 134 28.4
Sp3g14740 Schrenkiella parvula HOM05D000581 ORTHO05D000412 1.9e-09 65.9 134 29.1
Zm00001eb153570 Zea mays HOM05D000581 ORTHO05D000412 1.9e-09 65.9 134 30.6
FvH4_6g32380 Fragaria vesca HOM05D000581 ORTHO05D000412 2.5e-09 65.5 134 30.6
TWI12G0066 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 2.5e-09 65.5 133 27.8
CARHR091570 Cardamine hirsuta HOM05D000581 ORTHO05D000412 3.3e-09 65.1 134 29.9
Sc12g0009760 Simmondsia chinensis HOM05D000581 ORTHO05D000412 3.3e-09 65.1 134 26.9
TWI34G0670 Tripterygium wilfordii HOM05D000581 ORTHO05D000412 5.6e-09 64.3 99 33.3
CSS0043734 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 7.3e-09 63.9 134 29.1
HanXRQChr09g0276221 Helianthus annuus HOM05D000581 ORTHO05D000412 7.3e-09 63.9 133 27.8
Atru.chr1.3522 Acer truncatum HOM05D000581 ORTHO05D000412 1.2e-08 63.2 55 47.3
PSO832G2680 Papaver somniferum HOM05D000581 ORTHO05D000412 1.6e-08 62.8 110 31.8
Prupe.1G178800 Prunus persica HOM05D000581 ORTHO05D000412 1.6e-08 62.8 134 29.1
GSVIVG01035294001 Vitis vinifera HOM05D000581 ORTHO05D000412 1.6e-08 62.8 129 30.2
Potri.018G046800 Populus trichocarpa HOM05D000581 ORTHO05D000412 2.1e-08 62.4 130 27.7
Thecc.06G099900 Theobroma cacao HOM05D000581 ORTHO05D000412 2.1e-08 62.4 52 51.9
MSTRG.11029 Avicennia marina HOM05D000581 ORTHO05D000412 2.8e-08 62.0 52 50.0
ClCG09G000190 Citrullus lanatus HOM05D000581 ORTHO05D000412 2.8e-08 62.0 55 47.3
Sc15g0001900 Simmondsia chinensis HOM05D000581 ORTHO05D000412 2.8e-08 62.0 134 28.4
Rhsim08G0227400 Rhododendron simsii HOM05D000581 ORTHO05D000412 3.6e-08 61.6 131 29.8
CiPaw.01G231600 Carya illinoinensis HOM05D000581 ORTHO05D000412 4.7e-08 61.2 52 50.0
Aqoxy7G01417 Aquilegia oxysepala HOM05D000581 ORTHO05D000412 6.1e-08 60.8 134 29.9
Cc04_g02570 Coffea canephora HOM05D000581 ORTHO05D000412 6.1e-08 60.8 54 48.1
Duzib192G0371 Durio zibethinus HOM05D000581 ORTHO05D000412 6.1e-08 60.8 52 50.0
Duzib235G0680 Durio zibethinus HOM05D000581 ORTHO05D000412 6.1e-08 60.8 52 50.0
GSVIVG01015307001 Vitis vinifera HOM05D000581 ORTHO05D000412 6.1e-08 60.8 135 28.1
Zm00001eb353520 Zea mays HOM05D000581 ORTHO05D000412 6.1e-08 60.8 129 27.9
arahy.Tifrunner.gnm1.ann1.5X1YG2 Arachis hypogaea HOM05D000581 ORTHO05D000412 8.0e-08 60.5 62 43.5
arahy.Tifrunner.gnm1.ann1.R40G9H Arachis hypogaea HOM05D000581 ORTHO05D000412 8.0e-08 60.5 62 43.5
COL.COLO4_30511 Corchorus olitorius HOM05D000581 ORTHO05D000412 8.0e-08 60.5 52 48.1
MD15G1195900 Malus domestica HOM05D000581 ORTHO05D000412 8.0e-08 60.5 134 29.9
QL05p020124 Quercus lobata HOM05D000581 ORTHO05D000412 8.0e-08 60.5 52 48.1
EL10Ac9g21208 Beta vulgaris HOM05D000581 ORTHO05D000412 1.0e-07 60.1 52 48.1
Hma1.2p1_0012F.1_g007340 Hydrangea macrophylla HOM05D000581 ORTHO05D000412 1.0e-07 60.1 55 47.3
Psat5g295840 Pisum sativum HOM05D000581 ORTHO05D000412 1.0e-07 60.1 115 33.9
ClCG00G003330 Citrullus lanatus HOM05D000581 ORTHO05D000412 1.4e-07 59.7 126 28.6
ClCG07G013310 Citrullus lanatus HOM05D000581 ORTHO05D000412 1.4e-07 59.7 126 28.6
FAN14G1435 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.4e-07 59.7 150 27.3
BcaC05g28887 Brassica carinata HOM05D000581 ORTHO05D000412 1.8e-07 59.3 132 28.8
Ca_01164_v3 Cicer arietinum L. HOM05D000581 ORTHO05D000412 1.8e-07 59.3 52 50.0
Dinv23390 Davidia involucrata HOM05D000581 ORTHO05D000412 1.8e-07 59.3 128 29.7
Duzib150G1534 Durio zibethinus HOM05D000581 ORTHO05D000412 1.8e-07 59.3 52 50.0
ECA232G2591 Erigeron canadensis HOM05D000581 ORTHO05D000412 1.8e-07 59.3 134 26.9
Gohir.A10G065400 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.3e-07 58.9 52 46.2
Gohir.D10G066900 Gossypium hirsutum HOM05D000581 ORTHO05D000412 2.3e-07 58.9 52 46.2
Gorai.011G071100 Gossypium raimondii HOM05D000581 ORTHO05D000412 2.3e-07 58.9 52 46.2
CSS0047019 Camellia sinensis var. sinensis HOM05D000581 ORTHO05D000412 3.0e-07 58.5 128 28.1
CANSAT56G1346 Cannabis sativa HOM05D000581 ORTHO05D000412 3.0e-07 58.5 55 47.3
AUR62022204 Chenopodium quinoa HOM05D000581 ORTHO05D000412 3.0e-07 58.5 64 37.5
AUR62031913 Chenopodium quinoa HOM05D000581 ORTHO05D000412 3.0e-07 58.5 64 37.5
ClCG08G012100 Citrullus lanatus HOM05D000581 ORTHO05D000412 3.0e-07 58.5 100 32.0
Migut.I00899 Erythranthe guttata HOM05D000581 ORTHO05D000412 3.0e-07 58.5 54 46.3
Lj3g0013246 Lotus japonicus HOM05D000581 ORTHO05D000412 3.0e-07 58.5 62 41.9
MBI04_g20304_MAGBIO Magnolia biondii HOM05D000581 ORTHO05D000412 3.0e-07 58.5 116 31.9
Peaxi162Scf00699g10015 Petunia axillaris HOM05D000581 ORTHO05D000412 3.0e-07 58.5 101 30.7
Psat5g296160 Pisum sativum HOM05D000581 ORTHO05D000412 3.0e-07 58.5 52 50.0
Potri.006G236300 Populus trichocarpa HOM05D000581 ORTHO05D000412 3.0e-07 58.5 134 26.9
Sabra18G0045400 Salix brachista HOM05D000581 ORTHO05D000412 3.0e-07 58.5 102 30.4
Actinidia30287 Actinidia chinensis HOM05D000581 ORTHO05D000412 4.0e-07 58.2 127 29.9
Ciclev10030222m.g Citrus clementina HOM05D000581 ORTHO05D000412 4.0e-07 58.2 57 47.4
Dinv27922 Davidia involucrata HOM05D000581 ORTHO05D000412 5.2e-07 57.8 128 29.7
Duzib160G0067 Durio zibethinus HOM05D000581 ORTHO05D000412 5.2e-07 57.8 52 46.2
MELO3C030799.2 Cucumis melo HOM05D000581 ORTHO05D000412 6.8e-07 57.4 126 27.8
DCAR_004461 Daucus carota HOM05D000581 ORTHO05D000412 6.8e-07 57.4 128 28.9
Oeu023603.1 Olea europaea HOM05D000581 ORTHO05D000412 6.8e-07 57.4 54 42.6
BcaC01g03774 Brassica carinata HOM05D000581 ORTHO05D000412 8.9e-07 57.0 56 41.1
C03p48240 Brassica napus HOM05D000581 ORTHO05D000412 8.9e-07 57.0 56 41.1
BolC3t17104H Brassica oleracea HOM05D000581 ORTHO05D000412 8.9e-07 57.0 56 41.1
Ciclev10027101m.g Citrus clementina HOM05D000581 ORTHO05D000412 8.9e-07 57.0 55 43.6
COL.COLO4_20997 Corchorus olitorius HOM05D000581 ORTHO05D000412 8.9e-07 57.0 52 46.2
Lalb_Chr24g0396161 Lupinus albus HOM05D000581 ORTHO05D000412 8.9e-07 57.0 52 46.2
Manes.04G134100 Manihot esculenta HOM05D000581 ORTHO05D000412 8.9e-07 57.0 51 47.1
TPR.G26915 Trifolium pratense HOM05D000581 ORTHO05D000412 8.9e-07 57.0 62 41.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.2e-06 56.6 54 44.4
A03p39780 Brassica napus HOM05D000581 ORTHO05D000412 1.2e-06 56.6 56 41.1
BraA03t13128Z Brassica rapa HOM05D000581 ORTHO05D000412 1.2e-06 56.6 56 41.1
Lsat_1_v5_gn_4_97481 Lactuca sativa HOM05D000581 ORTHO05D000412 1.2e-06 56.6 54 44.4
FvH4_1g06050 Fragaria vesca HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 46.2
FAN19G1961 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 46.2
FAN26G2331 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 46.2
FAN26G3261 Fragaria x ananassa HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 46.2
Gohir.A06G091600 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 44.2
Gohir.A06G176400 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-06 56.2 124 29.8
Gohir.D06G090900 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-06 56.2 52 44.2
Gohir.D06G185950 Gossypium hirsutum HOM05D000581 ORTHO05D000412 1.5e-06 56.2 124 29.8
Gorai.010G218100 Gossypium raimondii HOM05D000581 ORTHO05D000412 1.5e-06 56.2 124 29.8
Oeu026782.1 Olea europaea HOM05D000581 ORTHO05D000412 2.0e-06 55.8 126 28.6
Oeu026784.1 Olea europaea HOM05D000581 ORTHO05D000412 2.0e-06 55.8 63 41.3
unitig_88.g27686 Utricularia gibba HOM05D000581 ORTHO05D000412 2.0e-06 55.8 79 36.7
RcHm_v2.0_Chr2g0091811 Rosa chinensis HOM05D000581 ORTHO05D000412 2.6e-06 55.5 52 48.1
Thecc.09G047700 Theobroma cacao HOM05D000581 ORTHO05D000412 2.6e-06 55.5 52 46.2
Ciclev10018345m.g Citrus clementina HOM05D000581 ORTHO05D000412 3.4e-06 55.1 128 27.3
Manes.11G033800 Manihot esculenta HOM05D000581 ORTHO05D000412 3.4e-06 55.1 127 26.0
Oeu026783.1 Olea europaea HOM05D000581 ORTHO05D000412 3.4e-06 55.1 50 48.0
EL10Ac2g03981 Beta vulgaris HOM05D000581 ORTHO05D000412 4.4e-06 54.7 54 44.4
Lj5g0007928 Lotus japonicus HOM05D000581 ORTHO05D000412 4.4e-06 54.7 59 42.4
PSO063G1926 Papaver somniferum HOM05D000581 ORTHO05D000412 4.4e-06 54.7 134 27.6
QL05p020091 Quercus lobata HOM05D000581 ORTHO05D000412 4.4e-06 54.7 133 26.3
Rhsim02G0175200 Rhododendron simsii HOM05D000581 ORTHO05D000412 4.4e-06 54.7 52 44.2
Hund00725 Selenicereus undatus HOM05D000581 ORTHO05D000412 4.4e-06 54.7 64 34.4
BolC5t33762H Brassica oleracea HOM05D000581 ORTHO05D000412 5.7e-06 54.3 56 39.3
FAN23G1499 Fragaria x ananassa HOM05D000581 ORTHO05D000412 5.7e-06 54.3 115 29.6
Gorai.010G218200 Gossypium raimondii HOM05D000581 ORTHO05D000412 5.7e-06 54.3 64 39.1
QL12p041013 Quercus lobata HOM05D000581 ORTHO05D000412 7.5e-06 53.9 57 38.6
Hund03381 Selenicereus undatus HOM05D000581 ORTHO05D000412 7.5e-06 53.9 131 26.7
Haze_25820 Corylus avellana HOM05D000581 ORTHO05D000412 9.8e-06 53.5 52 42.3
Duzib187G0513 Durio zibethinus HOM05D000581 ORTHO05D000412 9.8e-06 53.5 52 44.2
FAN20G0433 Fragaria x ananassa HOM05D000581 ORTHO05D000412 9.8e-06 53.5 135 26.7
PSO832G1046 Papaver somniferum HOM05D000581 ORTHO05D000412 9.8e-06 53.5 134 25.4
Psat6g169520 Pisum sativum HOM05D000581 ORTHO05D000412 9.8e-06 53.5 54 40.7


User provided reference genes

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