Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23009 Brassica carinata HOM05D006563 ORTHO05D008154 2.5e-127 458.8 227 100.0
A01p25680 Brassica napus HOM05D006563 ORTHO05D008154 4.4e-124 448.0 227 96.9
BraA01t02447Z Brassica rapa HOM05D006563 ORTHO05D008154 4.4e-124 448.0 227 96.9
BcaC09g49875 Brassica carinata HOM05D006563 ORTHO05D008154 5.8e-124 447.6 227 96.5
C01p32250 Brassica napus HOM05D006563 ORTHO05D008154 5.8e-124 447.6 227 96.5
BolC1t03129H Brassica oleracea HOM05D006563 ORTHO05D008154 8.3e-123 443.7 227 95.6
Sp5g13440 Schrenkiella parvula HOM05D006563 ORTHO05D008154 1.7e-120 436.0 227 93.4
Thhalv10010696m.g Eutrema salsugineum HOM05D006563 ORTHO05D008154 6.2e-118 427.6 228 92.5
AT3G48540 Arabidopsis thaliana HOM05D006563 ORTHO05D008154 9.8e-116 420.2 227 89.9
Carub.0005s1473 Capsella rubella HOM05D006563 ORTHO05D008154 4.9e-115 417.9 225 90.7
AL5G27990 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 1.1e-114 416.8 227 89.4
CARHR157340 Cardamine hirsuta HOM05D006563 ORTHO05D008154 1.9e-111 406.0 227 88.5
Aa31LG4G17160 Aethionema arabicum HOM05D006563 ORTHO05D008154 2.1e-105 386.0 231 83.1
Cpa.g.sc13.115 Carica papaya HOM05D006563 ORTHO05D008154 1.8e-101 372.9 224 80.8
MD14G1156900 Malus domestica HOM05D006563 ORTHO05D008154 3.8e-99 365.2 224 79.0
GSVIVG01008544001 Vitis vinifera HOM05D006563 ORTHO05D008154 4.9e-99 364.8 227 79.7
Prupe.5G150900 Prunus persica HOM05D006563 ORTHO05D008154 2.4e-98 362.5 223 78.0
Atru.chr6.1794 Acer truncatum HOM05D006563 ORTHO05D008154 4.2e-98 361.7 223 78.5
FAN04G0682 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.5e-97 358.6 223 75.8
Ciclev10032657m.g Citrus clementina HOM05D006563 ORTHO05D008154 4.6e-97 358.2 227 78.9
Dinv23146 Davidia involucrata HOM05D006563 ORTHO05D008154 7.8e-97 357.5 222 76.1
Gohir.D12G192100 Gossypium hirsutum HOM05D006563 ORTHO05D008154 1.3e-96 356.7 223 78.9
FAN18G2834 Fragaria x ananassa HOM05D006563 ORTHO05D008154 1.7e-96 356.3 223 74.9
COL.COLO4_28130 Corchorus olitorius HOM05D006563 ORTHO05D008154 3.0e-96 355.5 223 78.5
Gorai.008G206400 Gossypium raimondii HOM05D006563 ORTHO05D008154 6.6e-96 354.4 223 78.5
FvH4_5g08340 Fragaria vesca HOM05D006563 ORTHO05D008154 8.7e-96 354.0 223 74.4
FAN04G3009 Fragaria x ananassa HOM05D006563 ORTHO05D008154 8.7e-96 354.0 223 74.9
FAN13G1867 Fragaria x ananassa HOM05D006563 ORTHO05D008154 8.7e-96 354.0 223 74.9
Potri.015G096400 Populus trichocarpa HOM05D006563 ORTHO05D008154 8.7e-96 354.0 227 77.5
TAR374G0821 Trochodendron aralioides HOM05D006563 ORTHO05D008154 1.5e-95 353.2 223 76.7
CANSAT80G0303 Cannabis sativa HOM05D006563 ORTHO05D008154 1.9e-95 352.8 225 76.4
ClCG03G003770 Citrullus lanatus HOM05D006563 ORTHO05D008154 2.5e-95 352.4 222 77.9
TWI39G0919 Tripterygium wilfordii HOM05D006563 ORTHO05D008154 4.3e-95 351.7 221 76.9
Manes.06G119700 Manihot esculenta HOM05D006563 ORTHO05D008154 5.6e-95 351.3 225 76.9
Duzib205G1898 Durio zibethinus HOM05D006563 ORTHO05D008154 7.3e-95 350.9 223 75.8
Thecc.03G129300 Theobroma cacao HOM05D006563 ORTHO05D008154 7.3e-95 350.9 223 76.2
Gohir.A12G189700 Gossypium hirsutum HOM05D006563 ORTHO05D008154 9.6e-95 350.5 223 77.6
Peaxi162Scf00089g00627 Petunia axillaris HOM05D006563 ORTHO05D008154 9.6e-95 350.5 224 75.9
RcHm_v2.0_Chr7g0190121 Rosa chinensis HOM05D006563 ORTHO05D008154 9.6e-95 350.5 223 74.9
MELO3C002362.2 Cucumis melo HOM05D006563 ORTHO05D008154 2.1e-94 349.4 223 77.6
CsaV3_1G009660 Cucumis sativus L. HOM05D006563 ORTHO05D008154 2.4e-93 345.9 222 77.0
SalBow6G4201 Salvia bowleyana HOM05D006563 ORTHO05D008154 3.1e-93 345.5 221 74.2
SalBow6G4357 Salvia bowleyana HOM05D006563 ORTHO05D008154 3.1e-93 345.5 221 74.2
QL10p002894 Quercus lobata HOM05D006563 ORTHO05D008154 5.3e-93 344.7 247 70.4
CSS0042372 Camellia sinensis var. sinensis HOM05D006563 ORTHO05D008154 6.9e-93 344.4 221 74.7
CAN.G352.13 Capsicum annuum HOM05D006563 ORTHO05D008154 9.0e-93 344.0 225 75.1
Hma1.2p1_0426F.1_g150610 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 9.0e-93 344.0 222 76.1
Nitab4.5_0003282g0060 Nicotiana tabacum HOM05D006563 ORTHO05D008154 1.5e-92 343.2 221 75.6
PGSC0003DMG400015182 Solanum tuberosum HOM05D006563 ORTHO05D008154 5.8e-92 341.3 226 74.8
Actinidia08872 Actinidia chinensis HOM05D006563 ORTHO05D008154 9.9e-92 340.5 225 72.9
Lj4g0002806 Lotus japonicus HOM05D006563 ORTHO05D008154 1.3e-91 340.1 221 73.8
Oeu036009.4 Olea europaea HOM05D006563 ORTHO05D008154 1.3e-91 340.1 224 73.7
Sc04g0000640 Simmondsia chinensis HOM05D006563 ORTHO05D008154 1.3e-91 340.1 221 75.6
Solyc03g111350.3 Solanum lycopersicum HOM05D006563 ORTHO05D008154 1.3e-91 340.1 226 74.8
Nitab4.5_0004750g0020 Nicotiana tabacum HOM05D006563 ORTHO05D008154 3.8e-91 338.6 227 74.4
Phvul.003G211300 Phaseolus vulgaris HOM05D006563 ORTHO05D008154 3.8e-91 338.6 221 74.2
Hund02442 Selenicereus undatus HOM05D006563 ORTHO05D008154 4.9e-91 338.2 223 74.0
Sopen03g030480 Solanum pennellii HOM05D006563 ORTHO05D008154 4.9e-91 338.2 226 74.3
Aqoxy5G03376 Aquilegia oxysepala HOM05D006563 ORTHO05D008154 1.1e-90 337.0 232 71.1
SGA_v2.0_scaffold7G04149 Striga asiatica HOM05D006563 ORTHO05D008154 1.1e-90 337.0 222 73.4
Sed0017169 Sechium edule HOM05D006563 ORTHO05D008154 1.9e-90 336.3 225 74.7
Eucgr.B00111 Eucalyptus grandis HOM05D006563 ORTHO05D008154 5.4e-90 334.7 239 70.3
Ca_26101_v3 Cicer arietinum L. HOM05D006563 ORTHO05D008154 9.3e-90 334.0 227 71.4
HanXRQChr13g0408701 Helianthus annuus HOM05D006563 ORTHO05D008154 3.5e-89 332.0 224 71.9
Rhsim12G0174600 Rhododendron simsii HOM05D006563 ORTHO05D008154 3.5e-89 332.0 229 71.6
MSTRG.9682 Avicennia marina HOM05D006563 ORTHO05D008154 6.0e-89 331.3 221 71.5
MBI07_g16949_MAGBIO Magnolia biondii HOM05D006563 ORTHO05D008154 6.0e-89 331.3 226 71.2
Os01g0765000 Oryza sativa ssp. japonica HOM05D006563 ORTHO05D008154 7.8e-89 330.9 233 70.4
Medtr4g103300 Medicago truncatula HOM05D006563 ORTHO05D008154 1.0e-88 330.5 230 70.0
PSO017G5417 Papaver somniferum HOM05D006563 ORTHO05D008154 1.3e-88 330.1 227 69.2
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 5.1e-88 328.2 219 70.8
Migut.D01965 Erythranthe guttata HOM05D006563 ORTHO05D008154 6.6e-88 327.8 221 70.1
HPP92_025255 Vanilla planifolia HOM05D006563 ORTHO05D008154 1.1e-87 327.0 226 70.8
Oeu040847.2 Olea europaea HOM05D006563 ORTHO05D008154 1.9e-87 326.2 257 64.2
Cc09_g04000 Coffea canephora HOM05D006563 ORTHO05D008154 3.3e-87 325.5 247 66.0
Sabra15G0117200 Salix brachista HOM05D006563 ORTHO05D008154 5.6e-87 324.7 233 70.0
Lsat_1_v5_gn_1_28920 Lactuca sativa HOM05D006563 ORTHO05D008154 7.3e-87 324.3 223 69.5
Nn4g22315 Nelumbo nucifera HOM05D006563 ORTHO05D008154 7.3e-87 324.3 209 75.1
AUR62029612 Chenopodium quinoa HOM05D006563 ORTHO05D008154 1.8e-85 319.7 205 73.7
FAN08G2924 Fragaria x ananassa HOM05D006563 ORTHO05D008154 3.1e-85 318.9 244 64.3
Glyma.05G048400 Glycine max HOM05D006563 ORTHO05D008154 5.3e-85 318.2 205 75.1
EL10Ac5g11412 Beta vulgaris HOM05D006563 ORTHO05D008154 1.5e-84 316.6 209 73.2
ATR0561G278 Amborella trichopoda HOM05D006563 ORTHO05D008154 3.4e-84 315.5 205 73.7
CDE05G1358 Ceratophyllum demersum HOM05D006563 ORTHO05D008154 4.9e-83 311.6 207 72.0
unitig_46.g18474 Utricularia gibba HOM05D006563 ORTHO05D008154 1.1e-82 310.5 228 67.5
CiPaw.11G007100 Carya illinoinensis HOM05D006563 ORTHO05D008154 1.4e-82 310.1 223 70.4
PGR044G0473 Punica granatum HOM05D006563 ORTHO05D008154 1.6e-81 306.6 223 68.6
PSO478G0702 Papaver somniferum HOM05D006563 ORTHO05D008154 3.0e-80 302.4 209 69.4
AUR62034825 Chenopodium quinoa HOM05D006563 ORTHO05D008154 3.9e-80 302.0 205 70.7
arahy.Tifrunner.gnm1.ann1.G9M8TR Arachis hypogaea HOM05D006563 ORTHO05D008154 9.6e-79 297.4 219 68.0
arahy.Tifrunner.gnm1.ann1.76974R Arachis hypogaea HOM05D006563 ORTHO05D008154 2.1e-78 296.2 232 66.8
Potri.012G097800 Populus trichocarpa HOM05D006563 ORTHO05D008154 2.8e-78 295.8 225 68.0
SEGI_38890 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 9.0e-77 290.8 243 62.1
TPR.G19207 Trifolium pratense HOM05D006563 ORTHO05D008154 1.6e-73 280.0 152 85.5
Haze_07139 Corylus avellana HOM05D006563 ORTHO05D008154 3.0e-72 275.8 206 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2386 Anthoceros agrestis HOM05D006563 ORTHO05D008154 1.1e-71 273.9 176 73.3
Pp3c2_32260 Physcomitrium patens HOM05D006563 ORTHO05D008154 5.7e-71 271.6 175 70.3
VMungo1215G3263 Vigna mungo HOM05D006563 ORTHO05D008154 4.1e-69 265.4 172 75.0
Zm00001eb370270 Zea mays HOM05D006563 ORTHO05D008154 1.2e-68 263.8 228 60.5
DCAR_016389 Daucus carota HOM05D006563 ORTHO05D008154 5.0e-67 258.5 232 57.3
Medtr4g057655 Medicago truncatula HOM05D006563 ORTHO05D008154 6.1e-65 251.5 225 57.8
SMO116G0330 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 3.9e-64 248.8 147 78.2
vmacro16718 Vaccinium macrocarpon HOM05D006563 ORTHO05D008154 2.5e-63 246.1 327 44.6
Sc04g0000170 Simmondsia chinensis HOM05D006563 ORTHO05D008154 1.3e-62 243.8 207 63.3
PRCOL_00002657 Prasinoderma coloniale HOM05D006563 ORTHO05D008154 5.3e-61 238.4 173 61.8
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 4.5e-60 235.3 221 56.6
Medtr4g071665 Medicago truncatula HOM05D006563 ORTHO05D008154 1.3e-59 233.8 225 55.6
Lalb_Chr13g0297241 Lupinus albus HOM05D006563 ORTHO05D008154 3.2e-58 229.2 152 71.1
Lj5A96G46 Lonicera japonica HOM05D006563 ORTHO05D008154 9.4e-58 227.6 145 78.6
Cc09_g03990 Coffea canephora HOM05D006563 ORTHO05D008154 1.6e-57 226.9 123 83.7
MCO04G397 Micromonas commoda HOM05D006563 ORTHO05D008154 3.4e-52 209.1 135 67.4
Cre19.g750897 Chlamydomonas reinhardtii HOM05D006563 ORTHO05D008154 1.0e-43 181.0 174 52.9
CBR_g19095 Chara braunii HOM05D006563 ORTHO05D008154 4.7e-41 172.2 134 61.2
Haze_26466 Corylus avellana HOM05D006563 ORTHO05D008154 7.5e-39 164.9 168 48.2
AL1G65740 Arabidopsis lyrata HOM05D006563 ORTHO05D008154 1.8e-29 133.7 63 95.2
SMO199G0092 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 4.2e-26 122.5 86 64.0
Hma1.2p1_0426F.1_g150620 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 2.7e-25 119.8 68 86.8
SMO361G0344 Selaginella moellendorffii HOM05D006563 ORTHO05D008154 4.7e-25 119.0 63 79.4
MD06G1141700 Malus domestica HOM05D006563 ORTHO05D008154 2.6e-23 113.2 142 46.5
SEGI_22016 Sequoiadendron giganteum HOM05D006563 ORTHO05D008154 5.0e-19 99.0 122 47.5
Hma1.2p1_0426F.1_g150600 Hydrangea macrophylla HOM05D006563 ORTHO05D008154 1.5e-18 97.4 89 56.2


User provided reference genes

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