Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 2.7e-83 312.0 163 100.0
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 2.1e-80 302.4 165 97.0
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 2.1e-80 302.4 165 97.0
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 3.1e-79 298.5 165 95.8
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.9e-68 262.7 163 88.3
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.9e-68 262.7 163 88.3
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 3.6e-67 258.5 163 85.9
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 3.6e-67 258.5 163 85.9
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 3.6e-67 258.5 163 85.9
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 1.8e-63 246.1 163 84.0
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.2e-61 239.2 161 83.2
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 3.8e-61 238.4 151 84.8
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 3.6e-59 231.9 170 78.8
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 3.0e-58 228.8 162 81.5
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 4.4e-57 224.9 165 76.4
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 4.1e-55 218.4 119 95.0
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-48 196.8 165 69.1
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 5.5e-44 181.4 115 86.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 4.5e-38 161.8 107 83.2
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.2e-33 147.1 178 54.5
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.8e-32 141.7 160 55.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 9.1e-31 137.5 177 52.0
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.2e-30 137.1 113 63.7
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.2e-30 137.1 166 51.8
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.6e-30 136.7 166 51.8
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.9e-29 132.5 166 49.4
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 8.6e-29 131.0 190 48.9
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.1e-28 130.6 179 50.8
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.2e-28 128.6 165 49.1
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.5e-28 128.3 166 47.0
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 5.5e-28 128.3 166 47.0
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.6e-27 126.7 156 48.7
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.1e-27 126.3 124 62.9
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.7e-27 125.2 114 63.2
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 4.7e-27 125.2 168 47.6
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 5.2e-26 121.7 112 64.3
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 6.8e-26 121.3 167 47.9
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 6.8e-26 121.3 155 49.0
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.2e-25 120.6 167 47.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.5e-25 120.2 166 48.2
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 2.0e-25 119.8 159 49.1
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.6e-25 119.4 163 48.5
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.3e-24 117.1 164 51.2
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-24 116.7 139 48.9
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 3.7e-24 115.5 166 47.6
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 3.7e-24 115.5 168 48.8
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.9e-24 115.2 177 44.6
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 8.3e-24 114.4 187 47.1
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 1.8e-23 113.2 158 50.6
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 7.0e-23 111.3 152 48.7
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 7.0e-23 111.3 158 44.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.2e-22 110.5 179 45.8
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 4.5e-22 108.6 177 45.2
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.5e-22 108.6 153 47.7
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 7.8e-22 107.8 177 46.9
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.0e-21 107.5 174 44.3
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 2.9e-21 105.9 173 43.4
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 5.0e-21 105.1 162 47.5
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 8.6e-21 104.4 187 43.3
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 8.6e-21 104.4 154 46.1
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 8.6e-21 104.4 156 50.6
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.5e-20 103.6 169 42.6
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 2.5e-20 102.8 172 44.8
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 2.5e-20 102.8 114 55.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 7.3e-20 101.3 178 43.3
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 7.3e-20 101.3 156 44.2
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 6.1e-19 98.2 159 46.5
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 8.0e-19 97.8 178 43.3
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-18 97.4 174 42.0
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-18 97.1 170 45.3
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.4e-18 97.1 170 45.3
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.4e-18 97.1 152 45.4
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 1.8e-18 96.7 176 44.3
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.3e-18 96.3 152 44.1
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 3.1e-18 95.9 167 43.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.1e-18 95.9 170 45.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.0e-18 95.5 178 41.0
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 6.8e-18 94.7 164 44.5
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 6.8e-18 94.7 169 43.2
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 8.9e-18 94.4 158 44.3
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.2e-17 94.0 178 41.6
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 1.2e-17 94.0 152 42.1
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.5e-17 93.6 199 37.2
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 3.4e-17 92.4 160 44.4
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 5.8e-17 91.7 170 40.6
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.8e-17 91.7 178 43.3
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 9.8e-17 90.9 188 39.9
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.7e-16 90.1 178 39.3
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.2e-16 89.7 116 54.3
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 2.2e-16 89.7 169 40.2
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.9e-16 89.4 157 42.0
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 3.7e-16 89.0 173 42.2
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 3.7e-16 89.0 169 40.2
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 4.9e-16 88.6 176 40.3
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 4.9e-16 88.6 173 39.9
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 4.9e-16 88.6 201 37.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 6.4e-16 88.2 174 37.9
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 6.4e-16 88.2 117 49.6
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 6.4e-16 88.2 129 49.6
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 8.3e-16 87.8 172 41.9
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.3e-16 87.8 173 39.9
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.4e-15 87.0 156 42.3
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.4e-15 87.0 157 42.7
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 1.9e-15 86.7 174 40.2
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 2.4e-15 86.3 187 39.6
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 3.2e-15 85.9 174 39.1
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 3.2e-15 85.9 174 39.1
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 9.2e-15 84.3 171 39.2
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.2e-14 84.0 170 41.8
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.6e-14 83.6 160 41.9
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 2.0e-14 83.2 173 35.8
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.0e-14 83.2 166 39.8
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 2.7e-14 82.8 170 40.0
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 2.7e-14 82.8 87 55.2
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 3.5e-14 82.4 178 38.2
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 4.6e-14 82.0 163 36.2
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 4.6e-14 82.0 167 38.9
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 7.8e-14 81.3 88 53.4
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.0e-13 80.9 170 37.6
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.0e-13 80.9 173 38.2
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.0e-13 80.9 175 38.9
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 2.3e-13 79.7 162 36.4
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.3e-13 79.7 177 36.7
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 3.0e-13 79.3 178 37.6
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 6.6e-13 78.2 169 37.3
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 8.6e-13 77.8 123 40.7
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.1e-12 77.4 124 42.7
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 1.5e-12 77.0 149 36.2
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-12 76.3 162 37.0
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 2.1e-11 73.2 81 46.9
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 2.8e-11 72.8 115 47.8
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 4.7e-11 72.0 161 37.3
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 6.2e-11 71.6 151 36.4
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 8.0e-11 71.2 113 35.4
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.2e-10 68.6 175 34.9
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 8.9e-10 67.8 190 35.3
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 8.9e-10 67.8 163 32.5
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 1.2e-09 67.4 73 45.2
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 1.5e-09 67.0 178 32.0
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 5.8e-09 65.1 79 40.5
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 5.8e-09 65.1 52 61.5
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 7.5e-09 64.7 122 40.2
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.5e-09 64.7 160 33.1
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 7.5e-09 64.7 76 44.7
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 9.8e-09 64.3 75 44.0
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 9.8e-09 64.3 157 38.2
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.3e-08 63.9 160 33.1
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 2.2e-08 63.2 157 30.6
Zm00001eb085520 Zea mays HOM05D005335 ORTHO05D006472 2.9e-08 62.8 120 35.8
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 6.4e-08 61.6 158 31.0
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.3e-08 61.2 131 33.6
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 8.3e-08 61.2 165 32.1
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.1e-07 60.8 115 38.3
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 1.9e-07 60.1 84 40.5
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 4.1e-07 58.9 76 39.5
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 4.1e-07 58.9 107 33.6
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 7.1e-07 58.2 84 40.5
CDE05G3493 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 7.1e-07 58.2 173 28.3
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 7.1e-07 58.2 145 28.3
AL2G26780 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 2.7e-06 56.2 154 30.5
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 2.7e-06 56.2 151 27.8
CDE05G0728 Ceratophyllum demersum HOM05D000229 ORTHO05D000182 3.5e-06 55.8 173 28.3
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 3.5e-06 55.8 79 38.0
Os04g0386300 Oryza sativa ssp. japonica HOM05D005335 ORTHO05D006472 3.5e-06 55.8 93 37.6
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 4.6e-06 55.5 82 36.6
MD06G1234600 Malus domestica HOM05D000179 ORTHO05D000107 4.6e-06 55.5 85 37.6
FAN17G2176 Fragaria x ananassa HOM05D000179 ORTHO05D000107 6.0e-06 55.1 172 29.1
Lalb_Chr05g0221461 Lupinus albus HOM05D000179 ORTHO05D000107 6.0e-06 55.1 146 30.8
Sc10g0008970 Simmondsia chinensis HOM05D000179 ORTHO05D000107 6.0e-06 55.1 89 36.0
AT1G68130 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 7.8e-06 54.7 150 31.3
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 7.8e-06 54.7 164 26.8
Nitab4.5_0004454g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.8e-06 54.7 157 30.6
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 7.8e-06 54.7 130 36.2
Zm00001eb037730 Zea mays HOM05D000179 ORTHO05D000107 7.8e-06 54.7 82 37.8


User provided reference genes

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