Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23000 Brassica carinata HOM05D000094 ORTHO05D094186 1.2e-125 453.8 339 100.0
BcaC06g34092 Brassica carinata HOM05D000094 ORTHO05D001414 1.7e-34 151.0 174 54.6
C07p32820 Brassica napus HOM05D000094 ORTHO05D001414 1.7e-34 151.0 174 54.6
BolC7t43796H Brassica oleracea HOM05D000094 ORTHO05D001414 1.7e-34 151.0 174 54.6
A06p43900 Brassica napus HOM05D000094 ORTHO05D001414 3.7e-34 149.8 174 54.6
BraA06t27265Z Brassica rapa HOM05D000094 ORTHO05D001414 2.4e-33 147.1 174 54.0
AL5G11090 Arabidopsis lyrata HOM05D000094 ORTHO05D001414 3.5e-32 143.3 173 50.9
Carub.0005s0097 Capsella rubella HOM05D000094 ORTHO05D001414 4.5e-32 142.9 173 50.9
Thhalv10003548m.g Eutrema salsugineum HOM05D000094 ORTHO05D001414 9.4e-30 135.2 173 50.3
Sp2g13390 Schrenkiella parvula HOM05D000094 ORTHO05D001414 1.6e-29 134.4 173 49.1
AT2G01950 Arabidopsis thaliana HOM05D000094 ORTHO05D001414 4.7e-29 132.9 172 48.3
CARHR144560 Cardamine hirsuta HOM05D000094 ORTHO05D001414 2.0e-27 127.5 172 48.3
BcaC06g31257 Brassica carinata HOM05D000094 ORTHO05D001414 3.4e-27 126.7 96 74.0
Aa31LG2G7960 Aethionema arabicum HOM05D000094 ORTHO05D001414 1.1e-25 121.7 173 47.4
THA.LOC104805103 Tarenaya hassleriana HOM05D000094 ORTHO05D001414 5.0e-23 112.8 174 43.7
Potri.008G140500 Populus trichocarpa HOM05D000094 ORTHO05D001414 1.8e-17 94.4 172 36.0
Potri.010G101100 Populus trichocarpa HOM05D000094 ORTHO05D001414 4.1e-17 93.2 173 35.8
Sabra08G0106500 Salix brachista HOM05D000094 ORTHO05D001414 1.6e-16 91.3 172 36.6
Haze_10800 Corylus avellana HOM05D000094 ORTHO05D001414 9.5e-14 82.0 95 48.4
Cfa015080 Carpinus fangiana HOM05D000094 ORTHO05D001414 1.2e-13 81.6 95 48.4
Nitab4.5_0001822g0020 Nicotiana tabacum HOM05D000094 ORTHO05D001414 1.2e-13 81.6 150 38.0
RcHm_v2.0_Chr7g0218311 Rosa chinensis HOM05D000094 ORTHO05D001414 1.6e-13 81.3 174 34.5
FAN04G1395 Fragaria x ananassa HOM05D000094 ORTHO05D001414 1.4e-12 78.2 174 32.8
FAN08G3000 Fragaria x ananassa HOM05D000094 ORTHO05D001414 2.3e-12 77.4 174 32.8
Dinv20492 Davidia involucrata HOM05D000094 ORTHO05D001414 3.1e-12 77.0 303 31.4
FvH4_5g27210 Fragaria vesca HOM05D000094 ORTHO05D001414 4.0e-12 76.6 174 32.2
FAN18G0213 Fragaria x ananassa HOM05D000094 ORTHO05D001414 4.0e-12 76.6 174 32.2
Lsat_1_v5_gn_1_88201 Lactuca sativa HOM05D000094 ORTHO05D001414 4.0e-12 76.6 97 42.3
Sabra10G0073700 Salix brachista HOM05D000094 ORTHO05D001414 4.0e-12 76.6 159 34.6
HanXRQChr01g0019791 Helianthus annuus HOM05D000094 ORTHO05D001414 5.2e-12 76.3 118 39.0
FAN13G1577 Fragaria x ananassa HOM05D000094 ORTHO05D001414 2.0e-11 74.3 174 31.6
Aqoxy3G04038 Aquilegia oxysepala HOM05D000094 ORTHO05D001414 2.6e-11 73.9 96 44.8
TAR629G1106 Trochodendron aralioides HOM05D000094 ORTHO05D001414 2.6e-11 73.9 95 45.3
Manes.15G139302 Manihot esculenta HOM05D000094 ORTHO05D001414 3.4e-11 73.6 173 33.5
Atru.chr11.988 Acer truncatum HOM05D000094 ORTHO05D001414 4.4e-11 73.2 173 31.8
Glyma.08G092200 Glycine max HOM05D000094 ORTHO05D001414 7.5e-11 72.4 96 44.8
Thecc.02G302100 Theobroma cacao HOM05D000094 ORTHO05D001414 9.8e-11 72.0 174 33.3
Cpa.g.sc2.117 Carica papaya HOM05D000094 ORTHO05D001414 1.3e-10 71.6 93 43.0
CSS0013796 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001414 2.2e-10 70.9 120 37.5
CSS0030779 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001414 2.2e-10 70.9 120 37.5
Duzib251G0075 Durio zibethinus HOM05D000094 ORTHO05D001414 2.2e-10 70.9 95 43.2
CiPaw.06G057900 Carya illinoinensis HOM05D000094 ORTHO05D001414 2.9e-10 70.5 94 42.6
PSO782G2727 Papaver somniferum HOM05D000094 ORTHO05D001414 2.9e-10 70.5 96 43.8
Ciclev10007268m.g Citrus clementina HOM05D000094 ORTHO05D001414 3.7e-10 70.1 122 41.8
PSO063G5913 Papaver somniferum HOM05D000094 ORTHO05D001414 3.7e-10 70.1 96 42.7
Prupe.1G338800 Prunus persica HOM05D000094 ORTHO05D001414 3.7e-10 70.1 174 32.2
Psat7g085640 Pisum sativum HOM05D000094 ORTHO05D001414 6.4e-10 69.3 96 42.7
QL03p039295 Quercus lobata HOM05D000094 ORTHO05D001414 6.4e-10 69.3 96 45.8
Eucgr.G02065 Eucalyptus grandis HOM05D000094 ORTHO05D001414 1.1e-09 68.6 120 43.3
Glyma.05G136900 Glycine max HOM05D000094 ORTHO05D001414 1.1e-09 68.6 96 41.7
TWI38G0796 Tripterygium wilfordii HOM05D000094 ORTHO05D001414 1.1e-09 68.6 121 38.8
TWI74G1637 Tripterygium wilfordii HOM05D000094 ORTHO05D001414 1.1e-09 68.6 173 31.2
Actinidia29643 Actinidia chinensis HOM05D000029 ORTHO05D002500 1.4e-09 68.2 104 38.5
CiPaw.05G159700 Carya illinoinensis HOM05D000094 ORTHO05D001414 1.4e-09 68.2 173 31.2
MD16G1012100 Malus domestica HOM05D000094 ORTHO05D001414 1.4e-09 68.2 174 32.2
TPR.G11910 Trifolium pratense HOM05D000094 ORTHO05D001414 1.9e-09 67.8 96 42.7
Actinidia11783 Actinidia chinensis HOM05D000094 ORTHO05D001414 2.4e-09 67.4 94 40.4
CANSAT78G1775 Cannabis sativa HOM05D000094 ORTHO05D001414 3.2e-09 67.0 94 43.6
Manes.05G203800 Manihot esculenta HOM05D000094 ORTHO05D001414 3.2e-09 67.0 123 35.8
PGR142G3188 Punica granatum HOM05D000094 ORTHO05D001414 3.2e-09 67.0 93 43.0
Phvul.002G184800 Phaseolus vulgaris HOM05D000094 ORTHO05D001414 7.0e-09 65.9 96 41.7
Rhsim09G0084500 Rhododendron simsii HOM05D000094 ORTHO05D001414 7.0e-09 65.9 94 40.4
Hma1.2p1_1525F.1_g288835 Hydrangea macrophylla HOM05D000094 ORTHO05D001414 9.2e-09 65.5 95 36.8
Potri.011G169600 Populus trichocarpa HOM05D000094 ORTHO05D001414 9.2e-09 65.5 120 36.7
MD13G1014800 Malus domestica HOM05D000094 ORTHO05D001414 1.2e-08 65.1 174 31.0
HPP92_016705 Vanilla planifolia HOM05D000094 ORTHO05D001414 1.2e-08 65.1 92 40.2
VMungo0251G0561 Vigna mungo HOM05D000094 ORTHO05D001414 1.2e-08 65.1 96 41.7
Dinv20550 Davidia involucrata HOM05D000094 ORTHO05D001414 1.6e-08 64.7 65 49.2
Manes.17G090300 Manihot esculenta HOM05D000094 ORTHO05D001414 1.6e-08 64.7 95 38.9
Nn4g24579 Nelumbo nucifera HOM05D000094 ORTHO05D001414 1.6e-08 64.7 121 35.5
Atru.chr2.3907 Acer truncatum HOM05D000094 ORTHO05D001414 2.0e-08 64.3 122 38.5
Dinv07308 Davidia involucrata HOM05D000094 ORTHO05D001414 2.0e-08 64.3 95 40.0
TWI39G1093 Tripterygium wilfordii HOM05D000094 ORTHO05D001414 2.0e-08 64.3 121 38.0
Ca_18196_v3 Cicer arietinum L. HOM05D000094 ORTHO05D001414 2.7e-08 63.9 97 41.2
Ciclev10004191m.g Citrus clementina HOM05D000094 ORTHO05D001414 2.7e-08 63.9 176 31.8
Nitab4.5_0000175g0250 Nicotiana tabacum HOM05D000094 ORTHO05D001414 2.7e-08 63.9 122 37.7
Sc22g0004500 Simmondsia chinensis HOM05D000094 ORTHO05D001414 3.5e-08 63.5 127 38.6
Actinidia19599 Actinidia chinensis HOM05D000029 ORTHO05D002500 6.0e-08 62.8 99 36.4
CANSAT11G2196 Cannabis sativa HOM05D000094 ORTHO05D001414 6.0e-08 62.8 123 35.8
Lj4g0003396 Lotus japonicus HOM05D000094 ORTHO05D001414 6.0e-08 62.8 96 41.7
Manes.01G007700 Manihot esculenta HOM05D000094 ORTHO05D001414 6.0e-08 62.8 123 36.6
Peaxi162Scf00299g00347 Petunia axillaris HOM05D000029 ORTHO05D002500 6.0e-08 62.8 124 34.7
CAN.G458.16 Capsicum annuum HOM05D000094 ORTHO05D001414 7.8e-08 62.4 97 40.2
PGSC0003DMG400029442 Solanum tuberosum HOM05D000094 ORTHO05D001414 7.8e-08 62.4 97 40.2
TAR371G0701 Trochodendron aralioides HOM05D000094 ORTHO05D001414 7.8e-08 62.4 93 41.9
RcHm_v2.0_Chr6g0246351 Rosa chinensis HOM05D000029 ORTHO05D002500 1.0e-07 62.0 118 39.0
SGA_v2.0_scaffold23G10090 Striga asiatica HOM05D000094 ORTHO05D001414 1.0e-07 62.0 97 39.2
CDE02G3463 Ceratophyllum demersum HOM05D000094 ORTHO05D001414 1.3e-07 61.6 119 41.2
DCAR_023534 Daucus carota HOM05D000094 ORTHO05D001414 1.3e-07 61.6 65 47.7
Eucgr.B02648 Eucalyptus grandis HOM05D000094 ORTHO05D001414 1.3e-07 61.6 95 38.9
Gohir.A01G145100 Gossypium hirsutum HOM05D000094 ORTHO05D001414 1.3e-07 61.6 127 37.0
CSS0006018 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001414 1.7e-07 61.2 94 37.2
Eucgr.F03642 Eucalyptus grandis HOM05D000094 ORTHO05D001414 1.7e-07 61.2 126 34.9
Sabra16G0321100 Salix brachista HOM05D000094 ORTHO05D001414 1.7e-07 61.2 120 35.0
Solyc04g008430.1 Solanum lycopersicum HOM05D000094 ORTHO05D001414 1.7e-07 61.2 97 40.2
Sopen04g003580 Solanum pennellii HOM05D000094 ORTHO05D001414 1.7e-07 61.2 97 40.2
GSVIVG01011586001 Vitis vinifera HOM05D000094 ORTHO05D001414 2.3e-07 60.8 148 32.4
Cc11_g05620 Coffea canephora HOM05D000094 ORTHO05D001414 3.0e-07 60.5 95 38.9
Migut.E00541 Erythranthe guttata HOM05D000094 ORTHO05D001414 3.9e-07 60.1 103 39.8
Sed0009516 Sechium edule HOM05D000094 ORTHO05D001414 3.9e-07 60.1 95 38.9
SEGI_17846 Sequoiadendron giganteum HOM05D000094 ORTHO05D001414 3.9e-07 60.1 169 29.6
ATR0684G145 Amborella trichopoda HOM05D000094 ORTHO05D001414 5.0e-07 59.7 123 35.0
Aa31LG8G590 Aethionema arabicum HOM05D000094 ORTHO05D001414 6.6e-07 59.3 118 39.0
BraA01t03582Z Brassica rapa HOM05D000029 ORTHO05D002500 6.6e-07 59.3 129 34.1
CAN.G504.67 Capsicum annuum HOM05D000029 ORTHO05D002500 6.6e-07 59.3 95 37.9
Peaxi162Scf00025g00006 Petunia axillaris HOM05D000094 ORTHO05D001414 6.6e-07 59.3 97 40.2
Phvul.006G198200 Phaseolus vulgaris HOM05D000029 ORTHO05D002500 6.6e-07 59.3 124 35.5
FAN20G1555 Fragaria x ananassa HOM05D006483 ORTHO05D007837 8.6e-07 58.9 118 37.3
Lalb_Chr12g0209281 Lupinus albus HOM05D000094 ORTHO05D001414 8.6e-07 58.9 96 38.5
Sed0003178 Sechium edule HOM05D000033 ORTHO05D001614 8.6e-07 58.9 126 34.1
Ah.05g166800 Amaranthus hybridus HOM05D000029 ORTHO05D002500 1.1e-06 58.5 121 32.2
ClCG01G006820 Citrullus lanatus HOM05D000094 ORTHO05D001414 1.1e-06 58.5 95 36.8
DCAR_029859 Daucus carota HOM05D000029 ORTHO05D002500 1.1e-06 58.5 123 34.1
Lalb_Chr11g0068131 Lupinus albus HOM05D000094 ORTHO05D001414 1.1e-06 58.5 118 40.7
arahy.Tifrunner.gnm1.ann1.3C8H84 Arachis hypogaea HOM05D000029 ORTHO05D002500 1.5e-06 58.2 98 33.7
arahy.Tifrunner.gnm1.ann1.KWX927 Arachis hypogaea HOM05D000029 ORTHO05D002500 1.5e-06 58.2 98 33.7
BcaB04g20682 Brassica carinata HOM05D000029 ORTHO05D002500 1.5e-06 58.2 129 31.8
ClCG03G014120 Citrullus lanatus HOM05D000033 ORTHO05D001614 1.5e-06 58.2 126 34.9
Zm00001eb009640 Zea mays HOM05D000029 ORTHO05D000854 1.5e-06 58.2 124 37.9
FAN15G1224 Fragaria x ananassa HOM05D000029 ORTHO05D002500 1.9e-06 57.8 118 36.4
FAN24G0403 Fragaria x ananassa HOM05D000029 ORTHO05D002500 1.9e-06 57.8 118 36.4
Gohir.D01G135200 Gossypium hirsutum HOM05D000094 ORTHO05D001414 1.9e-06 57.8 88 39.8
Gorai.002G171000 Gossypium raimondii HOM05D000094 ORTHO05D001414 1.9e-06 57.8 88 39.8
ATR1120G023 Amborella trichopoda HOM05D000094 ORTHO05D001414 2.5e-06 57.4 113 37.2
A01p35010 Brassica napus HOM05D000029 ORTHO05D002500 2.5e-06 57.4 129 33.3
AUR62003502 Chenopodium quinoa HOM05D000094 ORTHO05D001414 2.5e-06 57.4 154 34.4
MELO3C005236.2 Cucumis melo HOM05D000094 ORTHO05D001414 2.5e-06 57.4 173 28.9
FvH4_2g02540 Fragaria vesca HOM05D000029 ORTHO05D002500 2.5e-06 57.4 118 36.4
Os09g0293500 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D001414 2.5e-06 57.4 71 38.0
THA.LOC104807729 Tarenaya hassleriana HOM05D000094 ORTHO05D001414 2.5e-06 57.4 113 42.5
Hma1.2p1_0933F.1_g238490 Hydrangea macrophylla HOM05D000094 ORTHO05D001414 3.3e-06 57.0 91 39.6
MBI13_g21677_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D001414 3.3e-06 57.0 66 45.5
Rhsim11G0146000 Rhododendron simsii HOM05D000029 ORTHO05D002500 3.3e-06 57.0 100 37.0
THA.LOC104824835 Tarenaya hassleriana HOM05D000094 ORTHO05D001414 3.3e-06 57.0 115 40.0
BolC3t20040H Brassica oleracea HOM05D000094 ORTHO05D001414 4.3e-06 56.6 115 37.4
FAN27G1985 Fragaria x ananassa HOM05D000029 ORTHO05D002500 4.3e-06 56.6 118 36.4
RcHm_v2.0_Chr5g0081631 Rosa chinensis HOM05D001506 ORTHO05D000455 4.3e-06 56.6 117 37.6
VMungo1080G0660 Vigna mungo HOM05D000094 ORTHO05D001414 4.3e-06 56.6 120 36.7
EL10Ac6g15373 Beta vulgaris HOM05D000094 ORTHO05D001414 7.3e-06 55.8 148 33.1
C03p77850 Brassica napus HOM05D000094 ORTHO05D001414 7.3e-06 55.8 115 37.4
BraA08t34315Z Brassica rapa HOM05D000094 ORTHO05D001414 7.3e-06 55.8 115 37.4
CDE06G1427 Ceratophyllum demersum HOM05D000094 ORTHO05D001414 7.3e-06 55.8 119 37.0
PSO170G2374 Papaver somniferum HOM05D000094 ORTHO05D001414 7.3e-06 55.8 118 38.1
vmacro11647 Vaccinium macrocarpon HOM05D000094 ORTHO05D001414 7.3e-06 55.8 120 34.2
ATR0767G204 Amborella trichopoda HOM05D000029 ORTHO05D002500 9.5e-06 55.5 100 34.0
A08p23580 Brassica napus HOM05D000094 ORTHO05D001414 9.5e-06 55.5 115 37.4
Dinv09499 Davidia involucrata HOM05D000029 ORTHO05D002500 9.5e-06 55.5 90 38.9
FAN11G1318 Fragaria x ananassa HOM05D001506 ORTHO05D000455 9.5e-06 55.5 117 37.6
Lalb_Chr23g0272401 Lupinus albus HOM05D000094 ORTHO05D001414 9.5e-06 55.5 117 36.8
Prupe.7G032500 Prunus persica HOM05D000071 ORTHO05D000029 9.5e-06 55.5 73 42.5


User provided reference genes

Program Settings