Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22983 Brassica carinata HOM05D000313 ORTHO05D000065 1.1e-86 323.2 159 100.0
C08p01640 Brassica napus HOM05D000313 ORTHO05D000065 5.4e-28 128.3 130 56.9
BolC8t46967H Brassica oleracea HOM05D000313 ORTHO05D000065 9.2e-28 127.5 130 56.9
A06p21660 Brassica napus HOM05D000305 ORTHO05D000065 3.5e-27 125.6 130 56.2
C01p21550 Brassica napus HOM05D000313 ORTHO05D000065 4.6e-27 125.2 130 53.1
BolC1t02075H Brassica oleracea HOM05D000313 ORTHO05D000065 4.6e-27 125.2 130 53.1
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 4.6e-27 125.2 129 56.6
BolC6t36657H Brassica oleracea HOM05D000305 ORTHO05D000065 6.0e-27 124.8 129 56.6
A09p30420 Brassica napus HOM05D000305 ORTHO05D000065 1.7e-26 123.2 129 55.8
BraA09t38611Z Brassica rapa HOM05D000305 ORTHO05D000065 1.7e-26 123.2 129 55.8
BraA09t38616Z Brassica rapa HOM05D000305 ORTHO05D000065 1.7e-26 123.2 129 55.8
A09p30460 Brassica napus HOM05D000305 ORTHO05D000065 2.3e-26 122.9 129 55.8
BcaB01g04686 Brassica carinata HOM05D000313 ORTHO05D000065 5.1e-26 121.7 129 53.5
A09p35480 Brassica napus HOM05D000305 ORTHO05D000065 5.1e-26 121.7 129 54.3
C06p14790 Brassica napus HOM05D000305 ORTHO05D000065 6.6e-26 121.3 154 49.4
C02p20670 Brassica napus HOM05D000313 ORTHO05D000065 7.3e-25 117.9 129 51.9
C06p26830 Brassica napus HOM05D000313 ORTHO05D000065 7.3e-25 117.9 134 53.0
BolC2t08209H Brassica oleracea HOM05D000313 ORTHO05D000065 7.3e-25 117.9 129 51.9
BolC6t37050H Brassica oleracea HOM05D000313 ORTHO05D000065 3.6e-24 115.5 129 51.9
BraA09t38529Z Brassica rapa HOM05D000313 ORTHO05D000065 3.6e-24 115.5 136 51.5
BcaC08g45074 Brassica carinata HOM05D000313 ORTHO05D000065 4.7e-24 115.2 130 54.6
BolC3t15032H Brassica oleracea HOM05D000305 ORTHO05D000065 1.1e-23 114.0 130 50.8
BcaB05g24149 Brassica carinata HOM05D000313 ORTHO05D000065 6.8e-23 111.3 157 45.9
C08p01650 Brassica napus HOM05D000313 ORTHO05D000065 2.0e-22 109.8 118 55.1
C07p05180 Brassica napus HOM05D000313 ORTHO05D000065 2.6e-22 109.4 130 50.8
BolC6t37005H Brassica oleracea HOM05D000313 ORTHO05D000065 2.6e-22 109.4 129 50.4
BraA08t32937Z Brassica rapa HOM05D000313 ORTHO05D000065 3.4e-22 109.0 130 50.8
C03p67840 Brassica napus HOM05D000313 ORTHO05D000065 4.4e-22 108.6 129 52.7
BolC8t46968H Brassica oleracea HOM05D000313 ORTHO05D000065 4.4e-22 108.6 125 50.4
BolSC21t60252H Brassica oleracea HOM05D000313 ORTHO05D000065 4.4e-22 108.6 129 52.7
BraA09t40035Z Brassica rapa HOM05D000313 ORTHO05D000065 4.4e-22 108.6 130 49.2
BcaB05g24332 Brassica carinata HOM05D000313 ORTHO05D000065 1.3e-21 107.1 132 47.7
C03p67830 Brassica napus HOM05D000313 ORTHO05D000065 1.7e-21 106.7 119 52.9
BolSC21t60251H Brassica oleracea HOM05D000313 ORTHO05D000065 1.7e-21 106.7 119 52.9
C04p53440 Brassica napus HOM05D000313 ORTHO05D000065 3.8e-21 105.5 130 47.7
BolC2t10493H Brassica oleracea HOM05D000313 ORTHO05D000065 3.8e-21 105.5 130 47.7
BolC4t26899H Brassica oleracea HOM05D000313 ORTHO05D000065 3.8e-21 105.5 130 47.7
BolC7t43481H Brassica oleracea HOM05D000305 ORTHO05D000065 8.4e-21 104.4 137 45.3
C05p31210 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-20 104.0 130 47.7
BolC4t24845H Brassica oleracea HOM05D000305 ORTHO05D000065 3.2e-20 102.4 129 48.1
C05p00200 Brassica napus HOM05D000313 ORTHO05D000065 9.3e-20 100.9 114 49.1
BolC6t36306H Brassica oleracea HOM05D000313 ORTHO05D000065 3.5e-19 99.0 118 51.7
C03p74100 Brassica napus HOM05D000313 ORTHO05D000065 1.3e-18 97.1 130 46.2
C04p14760 Brassica napus HOM05D000313 ORTHO05D000065 2.3e-18 96.3 126 45.2
C04p18760 Brassica napus HOM05D000313 ORTHO05D000065 2.3e-18 96.3 116 50.0
C07p50350 Brassica napus HOM05D000313 ORTHO05D000065 8.7e-18 94.4 76 65.8
BolC4t27111H Brassica oleracea HOM05D000313 ORTHO05D000065 1.9e-17 93.2 76 64.5
C03p73900 Brassica napus HOM05D000313 ORTHO05D000065 3.3e-17 92.4 127 45.7
BolC1t01299H Brassica oleracea HOM05D000313 ORTHO05D000065 5.6e-17 91.7 76 63.2
C06p26820 Brassica napus HOM05D000313 ORTHO05D000065 1.3e-16 90.5 137 42.3
BcaC08g45073 Brassica carinata HOM05D000313 ORTHO05D000065 1.8e-15 86.7 114 48.2
C09p55240 Brassica napus HOM05D000305 ORTHO05D000065 2.4e-15 86.3 152 41.4
BolC1t02310H Brassica oleracea HOM05D000313 ORTHO05D000065 3.4e-14 82.4 76 55.3
AL7G51950 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 5.8e-14 81.6 112 42.0
BolC7t45455H Brassica oleracea HOM05D000313 ORTHO05D000065 9.9e-14 80.9 48 81.2
BraA09t40037Z Brassica rapa HOM05D000313 ORTHO05D000065 1.3e-13 80.5 168 33.9
AT1G14800 Arabidopsis thaliana HOM05D000313 ORTHO05D000065 2.2e-13 79.7 74 48.6
C06p14800 Brassica napus HOM05D000313 ORTHO05D000065 6.4e-13 78.2 132 36.4
C06p47470 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-12 77.4 100 45.0
BcaB05g24331 Brassica carinata HOM05D000305 ORTHO05D000065 1.4e-12 77.0 130 41.5
BolC5t31313H Brassica oleracea HOM05D000313 ORTHO05D000065 1.4e-12 77.0 114 42.1
AL1G39460 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 1.9e-12 76.6 76 47.4
BcaB06g27784 Brassica carinata HOM05D000305 ORTHO05D000065 2.4e-12 76.3 130 41.5
BcaC01g01677 Brassica carinata HOM05D000313 ORTHO05D000065 3.2e-12 75.9 98 46.9
A03p45800 Brassica napus HOM05D000313 ORTHO05D000065 3.2e-12 75.9 127 40.2
BraA03t13710Z Brassica rapa HOM05D000313 ORTHO05D000065 3.2e-12 75.9 127 40.2
C06p53880 Brassica napus HOM05D000313 ORTHO05D000065 4.2e-12 75.5 55 63.6
A02p32970 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-11 73.9 67 55.2
Thhalv10000462m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 2.7e-11 72.8 76 47.4
AL4G17880 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 3.5e-11 72.4 129 32.6
Thhalv10009766m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 3.5e-11 72.4 76 47.4
A09p29630 Brassica napus HOM05D000313 ORTHO05D000065 7.9e-11 71.2 116 38.8
AL1G35450 Arabidopsis lyrata HOM05D000313 ORTHO05D000065 3.0e-10 69.3 55 58.2
Thhalv10005358m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 3.9e-10 68.9 76 46.1
BolC6t36658H Brassica oleracea HOM05D000313 ORTHO05D000065 6.6e-10 68.2 71 47.9
BraA05t19978Z Brassica rapa HOM05D000313 ORTHO05D000065 6.6e-10 68.2 71 47.9
C02p26880 Brassica napus HOM05D000313 ORTHO05D000065 8.7e-10 67.8 71 47.9
C07p05170 Brassica napus HOM05D000313 ORTHO05D000065 8.7e-10 67.8 85 47.1
C06p11720 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-09 67.4 73 52.1
BolC6t37003H Brassica oleracea HOM05D000313 ORTHO05D000065 1.1e-09 67.4 85 47.1
C05p38210 Brassica napus HOM05D003219 ORTHO05D020042 3.3e-09 65.9 51 64.7
BolC5t32549H Brassica oleracea HOM05D003219 ORTHO05D020042 3.3e-09 65.9 51 64.7
BraA06t25295Z Brassica rapa HOM05D000313 ORTHO05D000065 3.3e-09 65.9 95 45.3
BolC5t31705H Brassica oleracea HOM05D000313 ORTHO05D000065 7.3e-09 64.7 41 70.7
A01p32780 Brassica napus HOM05D000313 ORTHO05D024143 1.6e-08 63.5 44 63.6
BraA01t03405Z Brassica rapa HOM05D029020 ORTHO05D024143 1.6e-08 63.5 44 63.6
C03p74090 Brassica napus HOM05D000313 ORTHO05D000065 2.8e-08 62.8 109 42.2
BraA09t38612Z Brassica rapa HOM05D000313 ORTHO05D000065 1.1e-07 60.8 59 49.2
C04p44980 Brassica napus HOM05D000313 ORTHO05D000065 6.9e-07 58.2 105 37.1
BolC4t26266H Brassica oleracea HOM05D000313 ORTHO05D000065 6.9e-07 58.2 74 47.3
Thhalv10002797m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 6.9e-07 58.2 122 32.0
SpUn0001_0900 Schrenkiella parvula HOM05D000313 ORTHO05D000065 6.9e-07 58.2 154 27.9
C05p25650 Brassica napus HOM05D000313 ORTHO05D000065 9.0e-07 57.8 39 66.7
BolC5t31292H Brassica oleracea HOM05D000313 ORTHO05D000065 9.0e-07 57.8 39 66.7
Thhalv10002217m.g Eutrema salsugineum HOM05D010193 ORTHO05D012632 1.2e-06 57.4 129 28.7
Thhalv10015887m.g Eutrema salsugineum HOM05D000313 ORTHO05D000065 2.0e-06 56.6 125 31.2


User provided reference genes

Program Settings