Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 3.0e-119 431.8 210 100.0
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 5.8e-78 294.7 151 92.7
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 3.7e-77 292.0 151 91.4
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 3.7e-77 292.0 151 91.4
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 5.4e-76 288.1 151 92.1
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 5.4e-76 288.1 151 90.7
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 5.4e-76 288.1 151 90.7
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 5.4e-76 288.1 151 90.7
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 2.7e-75 285.8 151 90.1
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 6.0e-75 284.6 151 90.1
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 8.9e-71 270.8 151 86.1
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 2.0e-70 269.6 151 86.8
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 5.4e-68 261.5 132 91.7
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 3.5e-67 258.8 159 81.1
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 3.3e-65 252.3 149 81.2
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 4.4e-62 241.9 149 74.5
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 8.4e-61 237.7 150 73.3
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 1.9e-60 236.5 150 74.7
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.9e-60 236.5 150 74.0
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 9.3e-60 234.2 150 74.0
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.2e-59 233.8 149 73.8
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 7.8e-59 231.1 148 71.6
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.3e-58 230.3 150 73.3
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.7e-58 229.9 149 73.8
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 3.0e-58 229.2 150 74.0
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 5.1e-58 228.4 150 73.3
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.1e-57 227.3 147 70.7
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.5e-57 226.9 136 77.2
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 1.5e-57 226.9 136 76.5
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.9e-57 226.5 145 73.1
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 3.3e-57 225.7 150 73.3
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.3e-57 225.7 144 72.2
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 4.3e-57 225.3 147 70.1
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 4.3e-57 225.3 134 77.6
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 7.3e-57 224.6 139 73.4
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.6e-56 223.4 143 72.0
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 2.1e-56 223.0 149 71.8
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 6.2e-56 221.5 143 72.0
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 6.2e-56 221.5 143 70.6
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 8.1e-56 221.1 144 70.1
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 8.1e-56 221.1 144 70.1
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 1.4e-55 220.3 137 75.2
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.4e-55 220.3 137 73.7
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.0e-54 216.5 142 69.7
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 2.0e-54 216.5 151 70.2
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 3.4e-54 215.7 137 72.3
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 3.4e-54 215.7 135 72.6
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 4.4e-54 215.3 144 69.4
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 4.4e-54 215.3 138 71.0
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 5.8e-54 214.9 142 69.0
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 5.8e-54 214.9 135 72.6
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 7.6e-54 214.5 135 72.6
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.7e-53 213.4 150 68.7
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 1.7e-53 213.4 136 72.8
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.9e-53 212.6 134 73.1
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 2.9e-53 212.6 138 72.5
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 2.9e-53 212.6 152 69.1
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 3.8e-53 212.2 136 71.3
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 3.8e-53 212.2 136 73.5
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 6.4e-53 211.5 143 66.4
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 1.4e-52 210.3 136 68.4
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.4e-52 210.3 144 67.4
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 2.4e-52 209.5 136 70.6
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.4e-52 209.5 134 70.9
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 5.4e-52 208.4 142 65.5
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.6e-51 206.8 133 71.4
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 2.1e-51 206.5 137 67.2
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 2.1e-51 206.5 136 69.1
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 2.3e-50 203.0 135 68.1
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 5.1e-50 201.8 164 57.3
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 6.6e-50 201.4 137 69.3
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 8.7e-50 201.1 135 66.7
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.1e-49 200.7 140 65.0
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 1.1e-49 200.7 146 65.1
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.9e-49 199.9 141 67.4
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.9e-49 199.9 137 65.7
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 5.6e-49 198.4 142 69.7
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 6.2e-48 194.9 138 63.8
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.4e-47 193.7 135 63.7
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 5.3e-47 191.8 133 66.9
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 1.5e-46 190.3 146 59.6
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 2.0e-46 189.9 136 61.0
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 2.6e-46 189.5 139 65.5
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.3e-45 187.2 121 71.1
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 1.3e-45 187.2 134 61.9
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 2.9e-45 186.0 134 64.2
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 3.8e-45 185.7 139 63.3
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 4.6e-43 178.7 136 63.2
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 1.3e-42 177.2 136 58.8
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.8e-42 176.8 121 66.9
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 6.7e-42 174.9 155 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.5e-41 172.9 144 56.2
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 6.9e-39 164.9 144 53.5
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 6.5e-37 158.3 141 52.5
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 1.0e-34 151.0 104 66.3
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.3e-33 146.0 102 65.7
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 4.1e-31 139.0 167 47.3
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 8.4e-29 131.3 121 54.5
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 2.0e-22 110.2 94 69.1
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 3.4e-22 109.4 113 57.5
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.4e-22 109.4 65 80.0
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.9e-22 108.6 66 74.2
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 7.7e-22 108.2 73 65.8
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.7e-21 107.1 125 44.0
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 6.5e-21 105.1 85 70.6
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 6.5e-21 105.1 65 73.8
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.1e-20 104.4 55 94.5
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 2.5e-20 103.2 136 42.6
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 2.5e-20 103.2 151 39.7
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 5.5e-20 102.1 73 63.0
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 5.5e-20 102.1 65 66.2
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.0e-18 97.8 67 73.1
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 1.5e-14 84.0 94 54.3
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 5.0e-13 79.0 68 52.9
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 1.9e-12 77.0 56 73.2
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 5.5e-12 75.5 43 79.1
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.1e-11 73.6 53 58.5
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.1e-11 73.6 72 47.2


User provided reference genes

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